CI01000030_04070253_04083457



Basic Information


Item Value
gene id CI01000030_04070253_04083457
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4069447 ~ 4083892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000030_04070253_04083457.mRNA
GTATAAGAGGGACCCTTCCGCTTCCGTTACTTAATCCTCAGACATCAGCCAATTTCTAGTAAGACGTGGTAGAAGTTCAAAATAAATAAATTATCCTCGGACACACCTGCCCTCTACATCCAGACGCTCTGAAACGTAAACAATAAATAAAGGGTCAAAGCAACTCTTGACGTCTTTTATGGCTAGACAAAACAAACTGGAGCCCCATTTCACACGTTTAAACACAACATGCTCAGGAAACTCATAAAAGCTTGATTTTGAGGATAGAAAAGGGGTGTCAAAAGAGTAAAACATTAACATATTTGGTGAAACAGCATAACCACGCAAAACATGACCAAGCAAGTCTTGTTAAGAAGCTAGTCTCTCATGCTCATCTTAGCATCTCATGCTGGGGACGTGCATCCAAAATACAACATATGCTTTTCTCCTGGTGTTTTTCAGCTGGGAAATCTTAAGAAAGGGAGATGAAGGTGAACAACAGCAAATCCTTTGAGTGAAAACCTTTTTGAGTCACTGATCGTCGCTTTAAGGTTTATTCCTGTACCCGTCATCTTCCAAAAAGGTGGGAAATCTCATTGAGAGAAAGAAAATGAGAGACAAACATTTGAGAGATTTCAAATGAAAAAGGGCAGAAACTGAGCATATGAAAGGACAAAAAAAGACAGGTGAATGCTGGGGCAGATGATGCAGTGAGAAAAGCTCAGATTCAGAAGAGAAAAGCAGCACGTAGCTCACATTCAAAATCACAGTCACACATTAGTCATCAGGACCACCTGGAAGCTCATGAAACAAGAAAGACGAAGACAATGACCAATGCTTATTCACTTTCCACTTTTATAACACTCGAATATTTTGAACCACCTGTTCCTCCACTCGTCTTTTCAATGACGCAAAATGCTGCCAAAAGATGCGACAATGAAAAACATGTTCGTCTGTCACCCTCCTGTACTCTCCGAGTTTTCCACCTCAGGCCGTACACACGCGCACAGATTGCAATTGGTAGAAACTTCGGAAGGCAGCTGACACAGACTTGTAACTGTTCTCTGCTATCAGTTCACAATAAAGCCGGGCGGCATTATCATATCTATCAGCCGCCGTTAAAGAGATTGCAGCTTTGTCGGAAAGCTGCTGGAGGGAGACAGCAGGACCATCTCAAATCCAATCAGGTTGCATTTAAATTAAACTATACTGGAGGTAAACACTTCTGTGTGGCTTTTCAGTCACCTCTACCATTCACAAAGAAGGATGTCAGCCATAGGCAATCCGAAAAGCCTGGTGCTACCATTCAAACCCCCTTACAACAGGAAACTGCCTTAGACAGAAGGGAAGAAAATGCAGAAGGGGGGGTAGTGAAGAAGGAGATTTGGCTGTTTAACACAAAGAAGACTGGAATGCAAGGAGTTAATCCGTTTGAGGGTTCTTCCGCAAACAAAGGACAGGCCTCCAGACAAAGGTTGGTGGGGATTACATCTACTCAGCCTACCACTGTAACGGATGCTACTTTTCCAAACAGACGTATTGATTTTAGAACATGCCCTGTCCATAACTATGCACCCAAAAAGCTGATGTGCATTATTCTGCGTCTCCCTGATAGTTGTGTAGCCCCTTGAGGTCCAAGGTGTAAGTAGAGGGAGTTTCAGCAGTAATTGTGAGGTGGCAAAGGGAACAAGCAGGTGACTGCTCCCTCATTAAGCTTCAATGCACAGGTGCGTCCTCCTGCTGTGTACCTGCCCGGGCCGAAAGACCTCCCCTGTGGTGTATGAGTGTGCCTGCGCTAAGGTCTCGAGATCTGACGAGCGTTCGGCTAATTGAATAGCAACGGCGGTAATGACGACTGTCACCGGCATGCATGTTGACGCCCTACCACCATTACAAAAACACTGAAACGTTGGTAAACACAGCCATCTGTTTACTTGACTCTTTAATATTTATTTTCAGAGTACAGTCTAATTTTGCATGCATAAGTTGTAGAATTTGCCTTTTTAAGACTATGCTACTGGGCTGGATTAATAGCAAAATGATGGCATCAATACCTGAGGCAACAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000030_04070253_04083457.mRNA True 2045 mRNA 0.44 7 4069447 4083892

Neighbor


gene id symbol gene type direction distance location
CI01000030_03926592_03926762 NA coding upstream 142242 3926592 ~ 3927205 (+)
CI01000030_03917423_03918481 NA coding upstream 150773 3917423 ~ 3918674 (+)
CI01000030_03915675_03916993 NA coding upstream 152454 3915286 ~ 3916993 (+)
CI01000030_03909138_03910046 NA coding upstream 159401 3909038 ~ 3910046 (+)
CI01000030_03838027_03838812 NA coding upstream 228502 3836328 ~ 3840945 (+)
CI01000030_04163915_04171784 CRLF1B coding downstream 80023 4163915 ~ 4171907 (+)
CI01000030_04183583_04213798 CPAMD8 coding downstream 99691 4183583 ~ 4213798 (+)
CI01000030_04219745_04223677 ODF3L2 coding downstream 135853 4219745 ~ 4224790 (+)
CI01000030_04237332_04243409 SHC2 coding downstream 149796 4233688 ~ 4243787 (+)
CI01000030_04271795_04300240 SHDB, SHD coding downstream 187903 4271795 ~ 4301044 (+)
G159631 NA non-coding upstream 40890 4026534 ~ 4028557 (+)
G159604 NA non-coding upstream 94860 3974230 ~ 3974587 (+)
G159593 NA non-coding upstream 135003 3934123 ~ 3934444 (+)
G159484 NA non-coding upstream 149580 3851992 ~ 3919867 (+)
G159490 NA non-coding upstream 160958 3906081 ~ 3908489 (+)
G159714 NA non-coding downstream 44491 4128383 ~ 4128777 (+)
G159727 NA non-coding downstream 55091 4138983 ~ 4139239 (+)
G159689 NA non-coding downstream 58492 4142384 ~ 4142789 (+)
G159692 NA non-coding downstream 60329 4144221 ~ 4145049 (+)
G159675 NA non-coding downstream 63147 4147039 ~ 4150826 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1025674 3018776 ~ 3043773 (+)
G158416 NA other upstream 1455154 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1787077 2277208 ~ 2282743 (+)
G157726 NA other upstream 2431220 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 3062760 1003114 ~ 1003795 (+)
G159685 NA other downstream 347908 4431800 ~ 4488526 (+)
G159816 NA other downstream 432886 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3116043 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3770193 7868292 ~ 7886228 (+)
G162088 NA other downstream 4154073 8237965 ~ 8239604 (+)

Expression



Co-expression Network