CI01000030_04362878_04366419 (PLPP2, PLPP2B)


Basic Information

Item Value
gene id CI01000030_04362878_04366419
gene name PLPP2, PLPP2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4362878 ~ 4367296 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04362878_04366419.mRNA
CTTCTCTGCCCTTTGTGATAATGAATATTGCATCCCAGCCATATCAGCGAGGCATCTTCTGCCAGGACGAGAGCATCAGTTACCCTGTAAGACCGGACACCATCACGCACGTGGCGCTGGCTGCGGTCACCATCACCTGCACTATCATTATCATATCGTCAGGTGAAGCGTATCTGGTGTACAGCAAGAAAATTCACTCCAACTCTACCTTTAATCAATATGTATCGGCCATCTATAAGGTGCTGGGTGCCTTCCTATTTGGGGGAGCTGTCAGCCAATCACTGACCGACTTGGCCAAGTACACCATTGGGCGACCACGTCCACATTTCTTAACAGTGTGTGCTCCCAAAGTCTGCAAAGGATACTTGGCGGTGATCAACTGCACTGGCAACCCACGTGATGTGACTGAAGCCCGGTTGTCCTTCTACTCGGGTCACTCCTCCTTCGGGATGTACTGCATGCTGTTTCTAGCGTTCTATGTCCAGGCCAGGCTGAATGCAAAATGGGCCCGTCTTCTGAGGCCCACCATCCAGTTCTTCCTGGTGGCCTTTGCTGTGTATGTAGGTTACACCCGCGTGTCCGATTATAAGCACCACTGGAGCGACGTGCTAGTGGGGCTCCTCCAGGGGGCGCTTATCGCAATTCTCACTGTGCGATACGTCACAAATTTCTTCAAGGTCCGTCCTTCGCCTGAATACTCATGTCCAGAGACAGGAGCAGAAAATGAGGAGCAGAAACACAGCTTTCGAGGTGGAGCACAATAACCATTACAGCTATTCTGGACCTGTGTGAGAGAAATGAGAACAAACACTCGCACTACATCTCCCACAAACCACTGGACTGACGGCAGGGGGCGGAGTAAGACTGCACATGCTCACAATGGTCCTCCTTGAAAAAGCTTTAGTGTCTCTTCCTTTGTTTCAAGTGAGAGAGAACTCTTTATACGTATTTAATCAATTTATTTTAATCAAAACGATTTGCAGAGGATACCAGATATTGAGGGACTGAATCTATTTTTTAAGTCTGTGTACTGGACCAGGTTTTATACAAAGTCATGTACGACATGTATCTTCTTTATTTGAATTGTAAATCTTACTGAACTGTTGTGTAAATAATGGCTTGCCTTTCTCTTTGACAAACCAAACAGAATACCATACTCTGTGATTTAAAGTGTTGGAAATCATTGCTTGTTTGTATTTTTCCAATATTATGCGCCTTAATTATATCTAGTAATCTGGACTGCAAAAAGTGAATAATGCCATAAAATTGTTAGGATATCTTTTTTTCTTTTTTTTCCCCCCTGTTTAAAATTAAAAATTGAGATACCACTACAACATCTGCAAGCCTCTGTGCTTAATTTTTAATTTTTGCATTTTAAAAAAGCCAGCTTTATTGAACTTGTGAATTGTTGTTTGCATTTGTCTAATTTCCTATTAAATATTTGTAATAACAATTGGCTTGTTTGTTATTGAGTACCACAGTTTAATTTATTTTTTCAGATATTACTACTTTAAATGATAATTATCATAAATTGGACTCTATTTTGACTGCATTTGTATTCTAGTGTAAAACATGAGCTTGGTATATTTAATGTTTGTATATCCAGTTAGCATATTTTAATCCAGAAGTACTATGTCAATA

Function

symbol description
plpp2b Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; epidermis; lateral line system; pectoral fin; and periderm. Orthologous to human PLPP2 (phospholipid phosphatase 2).
plpp2 Enables ceramide-1-phosphate phosphatase activity; phosphatidate phosphatase activity; and sphingosine-1-phosphate phosphatase activity. Involved in phospholipid dephosphorylation; phospholipid metabolic process; and sphingolipid metabolic process. Located in caveola; early endosome; and endoplasmic reticulum. Is integral component of membrane.

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04362878_04366419.mRNA True 1641 mRNA 0.41 5 4362878 4367296

Neighbor

gene id symbol gene type direction distance location
CI01000030_04332510_04342834 MIER2 coding upstream 19228 4332510 ~ 4343650 (+)
CI01000030_04271795_04300240 SHDB, SHD coding upstream 61834 4271795 ~ 4301044 (+)
CI01000030_04237332_04243409 SHC2 coding upstream 119091 4233688 ~ 4243787 (+)
CI01000030_04219745_04223677 ODF3L2 coding upstream 138088 4219745 ~ 4224790 (+)
CI01000030_04183583_04213798 CPAMD8 coding upstream 149080 4183583 ~ 4213798 (+)
CI01000030_04393891_04405162 NA coding downstream 24654 4391950 ~ 4405618 (+)
CI01000030_04454078_04461414 NA coding downstream 84640 4451936 ~ 4462114 (+)
CI01000030_04552559_04571086 NA coding downstream 182650 4549946 ~ 4573001 (+)
CI01000030_04575377_04586894 GNA15.1 coding downstream 207778 4575074 ~ 4586927 (+)
CI01000030_04588910_04589122 NA coding downstream 220588 4587884 ~ 4589177 (+)
G159748 NA non-coding upstream 33346 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 38777 4323890 ~ 4324101 (+)
G159742 NA non-coding upstream 43304 4319170 ~ 4319574 (+)
G159741 NA non-coding upstream 44105 4318377 ~ 4318773 (+)
G159740 NA non-coding upstream 44886 4317649 ~ 4317992 (+)
G159816 NA non-coding downstream 149525 4516778 ~ 4517381 (+)
G159858 NA non-coding downstream 250047 4617343 ~ 4617551 (+)
G159863 NA non-coding downstream 265892 4633188 ~ 4633460 (+)
G159841 NA non-coding downstream 310868 4678164 ~ 4680912 (+)
G159836 NA non-coding downstream 370506 4737802 ~ 4738938 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1319105 3018776 ~ 3043773 (+)
G158416 NA other upstream 1748585 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2080508 2277208 ~ 2282743 (+)
G157726 NA other upstream 2724651 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 3356191 1003114 ~ 1003795 (+)
G159685 NA other downstream 64504 4431800 ~ 4488526 (+)
CI01000030_07200104_07202258 GCGA other downstream 2832639 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3486789 7868292 ~ 7886228 (+)
G162088 NA other downstream 3870669 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020410 plpp2b coding NC_007133.7 CM002906.2 21549419 ~ 21584670 (+)
bowfin (Amia calva) AMCG00005838 plpp2,lpp2,LOC106584410 coding CM030142.1 CM030142.1 10768791 ~ 10777146 (-)