CI01000030_04552559_04571086


Basic Information

Item Value
gene id CI01000030_04552559_04571086
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4549946 ~ 4573001 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04552559_04571086.mRNA
CCTTAAAAAGGACTTGACTTACTAGAATAAACACTGAGTATATTAGTGAAACTAAAATGTGTTGATCTGTGAGAACATGGTTTTTCAAACCCCCCAAAACCCTGAGAGATGACAACTTCCTGTCAGCTTTCAGACAGAGCAGTGGAGAGTCTACCGAGCTAGAAGCGGAAGGTTAACAGTGTTCGTTGGTCACGTAAGGCCCTCTTCCTCCACCGAGGTGTATCTTATTGATGTCTTTCCTCTGAGAGTCTGGGCACAAAGGCTGGTTGTGTTGCACACGGCAGGGCCCAAGCTTTCTAAGGACATACGTTTTATGAAGCACTTTTATGGGTCAGCCCACACTACACAACAAGGCCCCGTAACCGTGTCTGTTCATCTACGCAATTTGATCATTGCGTTGATCATTGTAGCCAATCACAGACATATCCGATGAGCACGTCAACACGATAGCCAATCAGAGGTGTTTACGAATACGCTCAACAGCGCTCAAAACATAACATTTTTAAAATTTCAGTACCGATAGGTACCGAAGTCGGTACTTTTGACAACTCTACGTGAAACCAAACTTCATTTGCCCCAATGGAAAGCATATTTACACTGTCTGAATCGTTCCCTATCCCCTATATACTGCACTATGTGCTATTCACAATGTAGATTCTAGAAAGCATTTGATTGGACAGAAAATCTGATGAGAAGCTGAAGTGCAGCGTGATGTCAGCATATTGGCGGAAGTGAGAGACTGCAAGTTTTGAATGCTTATATCTTCTAAATGCAAATTTTGTCATTGTTTTGGAGTACATAGTTTATAGATAACAGTAAGACTAACATATTCATACTAAAAGCCAAAAAACTTTGATCTTATTGAGACTTTAAGAGAAAAGCCCCGTTTGGGGGATTTATCCTCGTGACATCTGGCAACCAGGAAAGATAGTGGAGGCTTGTTACCAATGCAAGATAACGGAAATTAAAAAAAAAAGATTTTTTTTTTTTTTTTTTTCAGGACAAATAATCAGTGTGGCAAATATTGCAAGGATTATTTAAATTAATCGATAGAAGCCAAAATCGCTATCACAATTAAAACACGAATAATTGTGCAGCTCTAGCAGACAGAATGTCTTATTATCAGTCATTTAATCCAGTGGTTCTCAACCACATTCCTGGAGGCCCACCAACACTGCACATTTTGCATGTCTCCTTTGTCTGACACGCCCATTTTAGATCTTTGAGTCACTACTAATGAGCTGATAACCTTAATCAGGTGTGTTTAATTAAGGAGACATGCAAAATGTGCAGTGTTGGTGGGCCTCCAGGAATGTGGTTGAGAAACACTGAGGCCTTTAGATTAGACTGACCAAATATGACCTTGATCTGATTAAAGCTCTAGGAGGAGTTTGTTAAAGTACAACGTCTGGAAATGTCAAAAACTGCAAAATTTTAGAGTGAAAATTCAAAATATCTCACTTCCTGTTGGGTTTTCAGATTTTGCACCCAGGGACGTTTTTGTAGGTATTGGGCTGTTACATCTGTCTACTGAATTTCATACCTGTACGTGAAACATAGTGCGAATGGTGCTTAATTGAAATTTTGTAGGTGGCGCTATCAAGCCATTTTGCCACACCTAATTCTGGAACCAATATCAGATGTAAATTTTCACCACTTCTGATGCGTGTGCAAAGTTTCATGAGTTTTCGAGCATGTTTAGGACCTCAAAAATGCGATTAATTTCGGAATTTCAGGAATGTGGTTGAGAAACACTGATTCATTTCCAGATAGTATTATTTTCTTTTCAACAACGAAAAAGTTTTCGATGAAGTCAATGATTTGCATGTCACCTCGCAACACTTAGACTAAAGGCTGGTGTGGATAAGCCTATGAGTGGAGCGGGTCTACATTTTAACTCCTGCTAAAAGTGTTTTGTAATCACTTGGCTCAAACTTCTCTGCATGGTTCTACGTCAGAACGCCAGCTCAGTATTGGCCGATGCGGTTCACGTGAGCAGCACGACTCATGCGCATGATGCTGACACAGGAGTCGGCGTTCTGACGTAGAACCTGGAAGCGCTGGACGTAAACAGCGTAGGAGAATGACACAGAAGAGATGAATTTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGTGCACAAAAAGTATTCTCGTTGCTTTATAAAAGTAAGGTTAAACCACTGCAGTCATGTCAACTATTTTAACGATGTCTTTTCTACACTTCTGTGTAATTCTGTGGTAAGTAAATTGCTGTCTATGGATGAGTCAGAAAGCTCTCCGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACAGGTTTGGAATGACATGATGAGTAATTAATGACAGAAAAAATTTTTTTGGGTGAACTAACACTTTAAGGCATGACTTTTTTTTTTTTTTTTTAAACGTTTAAATATGTCATTTTGGTGATCAAAGATGAGTTTTAAGTGATAAAATTATTGACTACAGGGGGACTTTAATACAATACAATGCTTAAAAAATGCTTAATATTATTGTTTTTTGTAGTTATTGTATTTCTGCAGGAGAAATGGGGGATTATTACTACTGTTCCTTGTCTCAAAAAAAAATGGACGGCATCGCCAAAAATAAGGAAATCGACCGCATCCTTGCTGAGCATAGGAAAAAAGAAAATAAACAGCCTCTATTGCTTTTATTAGGCACAAGAGAAAGCGGAAAGACAACGTTTATGAAGCAGATGAGGATTTTTCATGGAAATGGCTTCTCAGAAGATGAGAGGCGCAGCTACACTAAACTGGTTTTCCAGAATATCTTCCAAGCAATAAGTGCAATAACAGAAGCCATGAGCACGCTAAAGATTCCCTACTCCAACCCACAGAACGAGATTTATGCCCAGTGGTTCCAGGATCAGGACATACATCAGGTAACTCAGCTGCAGAGAAGTTATGTAGAGGCTATTCGTCACCTATGGGAAGATCAAGGCGTTAAGATCTGCTACAAACGACGCAGAGAGTATCAGCTACTGGACTCCACTGGGTACGAGTACGACCAACTTCTGGAGGAGAATAACAAGAAAAATCGTATGGAAGAGAGCTTGTCACTGTTCTACTCGACCATACACTCACCGTTGTTTGCTAAATCCTCCATCATCCTGTTCCTGAACAAAATGGACATCTTGGCCGAGAAGATTCAGTTCTCGGATTTAAAAACATACTTTCCTGGATTTAAAGGCAAACGTCAGGATGTTCAAGATGCCATGCAGTTCATCGAAGAGTTATATAAACAGAAAGCAGGTAGCAGTGAGAAGTCCAAAAACATTTACTCTCACTTCATCTGTGCCATGGAGTTCATTAACCCCCGGATACTCTTCTTGGATGTTGAACACACTGTTCTGTCACAAGTTTTAGAGAATTGCTTAATTTCTGTTGGAGAAATGGGGCAGTACTACTACTGTGGATGTTGCACCTGTTTCTTGTCTGAAGAGGACAGGAGCGCCATTGCCATAAATAAGGAAATCAAACACATCCTTGCAGAGCAGAGGAAAAGAGAACGGAGAGAAGTCAAGTTGCTTTTATTAGGCACTGGAGAAAGCGGAAAGACAACGTTTATGAAGCAGATGAGGATTATTCATGGAAAGGACTTCTCAGAAGACGAGAAGCACAGCTACACTAAACTGGTTTTCCAGAATATCTTCAAAGCAATGAGTGCAATAACAGAAGCCATGAGCACACTAAAGATTCCCTACTCCAACCCACAGAACGAGGTGATCAAGTGTGTGTTTCTGAGAGCCTGGAGATTCCATTTTATGTCAACAATCATATGGGTGATTTATGCCCAGTGGTTCCAGGATCAGGACATACATCAGATAACTCAGCTGCAGAGAAGTTATGTAGAGGCTATTCGTCACCTATGGGAAGATCAAGGCGTTAAGATCTGCTACAAACGGCGCAGAGAGTATCAGCTACTGGACTCCACTAAGTACTTTATTGGTAACTTGGACCGCATTACAGCCGAAGGCTACATCCCTACAAATCAAGATATTCTTCAAGTCCGATTCCCCACTACTGGCATCACAGACCATTGCTTTGCATTGGAGAAGATGACTCTCAGGATTGTAGATGTCGGTGGTCAGAGGGGACAGAGAAGAAAGTGGATCCATTGCTTTGAGAATGTGATGTCGCTCATATTTCTAGCCTCCCTCAGCGAGTATGACCAACTTCTGGAGGAGAATAACAAGGATAACCGTATGGAAGAGAGCTTGTCACTGTTCTACATGACCATCCACTCAAATTGGTTTGCTAATTCCTCCGTCATCCTGTTCCTAAACAAAATGGACATCCTGGCTGAGAAGATTCAGTTCTCAGATCTAAAAACATACTTTCCTGGATTTAAAGGTAAACGTCGGGACGTTCAAGACGCCATGTTGTTCATCAGAAGTTTATATAAACACAAAGCAGTTTCCTACGAGACAAAGAACTCCAAAAACATCTACTCTCACTTCACTTGTGCCACGGACACCAGAAACATCCAAAAAGTCTTCACCGACGTGAAAGACGCTGTCCTCCTCGTAGCCTTAAAGGAGTTTGAATTATTATGAGCCCCAAATGCACCTTCAGTTTGCATAATCATCAGCCAAATGAATGTTTTATCATTATTTATAACAGAGCATTCTTGGACAAAATGTGATTATGAGTCAATTTCCTATTGGCCTATATGTATGCTTGGGCTGTTGGAGAAAATATAAAACATTACACAAGTGTAAAGGATAACAATACAATACACTTTAACTGTGTAAAAAAAAAAACAGTCAGCTTGAGGTAGCTACAAGTATTATGTGGTTAAATGTCAAAATAACTGCAATATCACACACTGTGAGTTGTGTGGGGTGGGGGTAAATTAAGCACGATCTGCTGTGACATCACAATCGTGTTGCGTTGTGGTCTATGGATCTGCTTGAAGAGTTGCTGCATTCATGCCATGTCATAATTACCATTTTTCTAGATGCCCACACGTGACATTCTTCAACTGGGAATAATGCGTTTCTTGGTCAAAATTGAGGGTATGTCCAAATAAACTTCCCTTGCCTACTTGACGAACACTTCAAAATGGCATTAGGGATCCCCCAAAGGGGAAGTGCTTAGGGAAGTTTGTAAGTGTATGTTTGCAACCTTTTTTCCTGCCAGTGCGGCTAAAATGTGTTCAAGGACACTGTTTTTGCTCTATATCACCAACAAAAATGGTTCCAATCAAATCCACAGCAGAAGCGTCTTGCATCATCTCATTAGTTATTGAATGAATCCATGATATAATTCATTCAATTACCCATTCACGAAGGATGCGTCTAATTCAGCTCCCTAGTTCAGCAGTCAGGGCACTGATCAGGGAGTTGGCAATTTTTTTTAATCGTAAAATCCTTCCAGTGAACTGAAACATTCACTCCCTGAAAAGTACCACAATGCACCATGAAAAGGGAACATAGTGAACATCGATGCTCCCTGGTTAACAGAAGTTCTGAAGTGCGAAACTTAAATCATGTGAGCCAACTCACTACACAAAATGACCCCTGATAGATGTTTTTTTTAAAAATACAATTCAAACTGTACTTTAAATAACATTAAAAAAGAATATAATAAAGATATCAGTTCTGCTGTTGTTCATAAATACCAGTAGGGAAGTTGTCATGATGCTGGAAATAGGGTCATCAGTGTCCCAATGTGTACTGAGAGAGGGTCCTTACTGCCTGAATTTGTGTACATGATATACTGATTAGTGACCTAGGAAACTCGTTTGAGACGCACCCATGGTCATCAGTCACTTGCTTGGTTCCTGAACGAATCAGACCTTTTGAACAAATCAAATGATTCCATGGCACATTCATTAAGACAGTGACTTTCATAATTTATTTAACATAATTTATTTTTCACATTCATATTTATATATATTTAAAATGTTAAATGTAAAACATTGATCTTATAAGATTATTTATGCAATTATAATCATGCATCCATGCCACCCCTGATCTGCATTAAAGTCTGTGTAAATACATCTAATGCCACTTCAGAAGCAGCTTCTGTTCCATCTCTGCAGTTCAAGCACGGATTTTGTTGATACTTAATTCATTTTATTGGTAACAGCCCTAGTCTTATTATTCTAATTAAATTAGATTGTTTAAGAATTTGACATAAAAGTTGACAGCTATACCTTTAATTAGTCCTAGTCCTGTTAGAACGCTGCTCAGCCAATCAAATTTAAGATTTAAGTTTTATAACACAGATTGTAGCACCAGTGTGACACTGGACCAGTCAAACATGTTAAATTAAATACAATGTCAGGGATTTCCAGGAACCCTACACATACACATTATCACACTATCCACTATTCTTTAGGACATAAAGGGCACAGTGTCTTTTTGTAACCAAAAAGCCACGACATCTCATGACCATTTAAATCTATAATACGAAAATAGAGGATGCATACATTTTCCACTGAAAATAGGTCATTGAACAAAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04552559_04571086.mRNA True 6517 mRNA 0.39 13 4549946 4573001

Neighbor

gene id symbol gene type direction distance location
CI01000030_04454078_04461414 NA coding upstream 87832 4451936 ~ 4462114 (+)
CI01000030_04393891_04405162 NA coding upstream 144328 4391950 ~ 4405618 (+)
CI01000030_04362878_04366419 PLPP2, PLPP2B coding upstream 182650 4362878 ~ 4367296 (+)
CI01000030_04332510_04342834 MIER2 coding upstream 206296 4332510 ~ 4343650 (+)
CI01000030_04271795_04300240 SHDB, SHD coding upstream 248902 4271795 ~ 4301044 (+)
CI01000030_04575377_04586894 GNA15.1 coding downstream 2073 4575074 ~ 4586927 (+)
CI01000030_04588910_04589122 NA coding downstream 14883 4587884 ~ 4589177 (+)
CI01000030_04708812_04716224 NA coding downstream 135576 4708577 ~ 4717703 (+)
CI01000030_04730959_04734987 NA coding downstream 156700 4729701 ~ 4734987 (+)
CI01000030_04794796_04802874 DDX59 coding downstream 221641 4794642 ~ 4802932 (+)
G159816 NA non-coding upstream 32565 4516778 ~ 4517381 (+)
G159748 NA non-coding upstream 220414 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 225845 4323890 ~ 4324101 (+)
G159742 NA non-coding upstream 230372 4319170 ~ 4319574 (+)
G159741 NA non-coding upstream 231173 4318377 ~ 4318773 (+)
G159858 NA non-coding downstream 44342 4617343 ~ 4617551 (+)
G159863 NA non-coding downstream 60187 4633188 ~ 4633460 (+)
G159841 NA non-coding downstream 105163 4678164 ~ 4680912 (+)
G159836 NA non-coding downstream 164801 4737802 ~ 4738938 (+)
G159887 NA non-coding downstream 172029 4745030 ~ 4745324 (+)
G159685 NA other upstream 61420 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1506173 3018776 ~ 3043773 (+)
G158416 NA other upstream 1935653 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2267576 2277208 ~ 2282743 (+)
CI01000030_07200104_07202258 GCGA other downstream 2626934 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3281084 7868292 ~ 7886228 (+)
G162088 NA other downstream 3664964 8237965 ~ 8239604 (+)
G161986 NA other downstream 3971581 8544582 ~ 8548325 (+)
G162137 NA other downstream 3995009 8568010 ~ 8571726 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020421 gna15.3 coding NC_007133.7 CM002906.2 22004082 ~ 22014961 (+)