XLOC_008830


Basic Information

Item Value
gene id XLOC_008830
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 46799469 ~ 46801184 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017496
agcggatgcccttccagctgcagcccagtactgggaaacacccatacacactcattcacacactcatacactacagcctatggactatgtgtgtgtgtggagtgtaCTGACCTTCACAGATGGGACAGCATTGGTCTTCAGGCTGGACGGTGTGTGTGCAGGAGAGTGTAGGACACATCACTGGGTCACAGATCACCGTCTTTTTCTGCAcacgGTGCAGGTGAAGCAGGTGTTGTACTGCGGTGTCCACTGTGAGCCGTGTGTGTGTTGTTCTCCCTCAAAGAAGCAGGAGTgtacgtgagtgtgtgtgtctttgcGCAGCTCCGTCGGCTCCCGTGTGAACAGCAGATCCTCAAACTCCGGCTCCTCCAGAAACTCAGCGCGGGGCGCCGGGGACTCACAGTGGTTCGGGACGTGGATctgatgaccacacacacacacacacacaggttcaacacacacacttacaggtCTCCTGAAGAGCTctgaaatgtgcagtttttattGGATGTTTGACGTAGTCTCAACTGAAACACGAAGAGAGGGCGGGGcaaagtagctcctcccctttttaaaatcagc
>TCONS_00017497
TGTAGGACACATCACTGGGTCACAGATCACCGTCTTTTTCTGCAcacgGTGAAGCAGGTGTTGTACTGCGGTGTCCACTGTGAGCCGTGTGTGTGTTGTTCTCCCTCAAAGAAGCAGGAGTgtacgtgagtgtgtgtgtctttgcGCAGCTCCGTCGGCTCCCGTGTGAACAGCAGATCCTCAAACTCCGGCTCCTCCAGAAACTCAGCGCGGGGCGCCGGGGACTCACAGTGGTTCGGGACGTGGATctgatgaccacacacacacacacacacaggttcaacacacacacttacaggtCTCCTGAAGAGCTctgaaatgtgcagtttttattGGATGTTTGACGTAGTCTCAACTGAAACACGAAGAGAGGGCGGGGcaaagtagctcctcccctttttaaaatcagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017496 False 582 lncRNA 0.53 2 46799469 46801184
TCONS_00017497 True 410 lncRNA 0.53 2 46799635 46801184

Neighbor

gene id symbol gene type direction distance location
XLOC_008829 CR381579.3 coding upstream 54280 46695492 ~ 46745189 (+)
XLOC_008828 NA coding upstream 137074 46661849 ~ 46662395 (+)
XLOC_008827 CABZ01044048.1 coding upstream 174749 46605482 ~ 46624720 (+)
XLOC_008825 NA coding upstream 200605 46385774 ~ 46598864 (+)
XLOC_008826 CABZ01044047.1 coding upstream 203889 46595466 ~ 46595580 (+)
XLOC_008831 CR381579.4 coding downstream 157 46801341 ~ 46806280 (+)
XLOC_008832 zgc:153039 coding downstream 52068 46853252 ~ 46913075 (+)
XLOC_008833 ecel1 coding downstream 207123 47008307 ~ 47075260 (+)
XLOC_008834 cep57 coding downstream 281979 47083163 ~ 47088424 (+)
XLOC_008835 gap43 coding downstream 360733 47161917 ~ 47176151 (+)
XLOC_008463 BX663520.1 misc upstream 25547187 21252191 ~ 21252282 (+)
XLOC_008824 NA non-coding upstream 420898 46367543 ~ 46378571 (+)
XLOC_008836 NA non-coding downstream 494860 47296044 ~ 47297545 (+)
XLOC_008837 CABZ01088337.1 non-coding downstream 521676 47322860 ~ 47322976 (+)
XLOC_008846 CABZ01087560.1 non-coding downstream 808138 47609322 ~ 47614730 (+)
XLOC_008848 CU655829.1 non-coding downstream 920689 47721873 ~ 47725335 (+)

Expression


Co-expression Network