XLOC_008836


Basic Information

Item Value
gene id XLOC_008836
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47296044 ~ 47297545 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019087
tgtctgtctgtccgtctgtccgtctgttaGATCTGGTATTCCTCTATTCCAGGTCTCTCTGATTGCTGCAGTATTCATGAGTGCgttaaatatgtaaatctgaGGGCTGTGGGCGTGTCTGAGAGCTGTGGGTGTGCCCGATGACTGTGGGCGTACCCGATGACTGTGGGCGTGTCCGATGACTGTGGGCGTGTCCGATGACTGTGGGCGTGTCCGATGACTGTGGGCGTGTCCGATGACTGTGGGCGTGTCCGAGGGCTGTGGGCGTGTCTGAGGGCTGTGGGCGTGTCTGAGAGCTGTGGGCGTGTCCAAGGGCTGTGGGCATATGTGAGGGCTGTGGGTGTGTCTGAGGGCTGTGGGCGTGTCTCTGTGCTTCTGTGCTGAATGTCAGTTTCTTCATTTATTAGTCTGCTGCTGGAGTCGGACGCACTGGACACCACTTGTGCTCgatattattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagaattGATTATTATTGCAGTAAGCAGTTTGTGTGACCTGAGGACGTCTGCTGTCTGCGTGATGATGAAATCAGACTGATGACATCATCATCTGCAGAGGGGCGTGGCCAGCCACAGCAGGGAAGCGTGTTCATTATGTTAAGCACAGACGcttcagcagcacacacacacacacacactgctgtcatGCTCATCATGTGCTCACAGTCCGTCAACACACGCTcagcctgtgtgtgtttgtgcgtttcACTGATCCGCTGATTGGTGCTTACCAGATCGGGTTAtttcaggacacacacacacacacacacagccttacAGAAgagtatgtgtgagagagagtgggtgtgtgtgagaggtcaagtgtgtgtgtgtaagacagagagtgtgtgtgtgatggtgttcagtctgtctatctctctgatGTCTGTCTCCATCAGGCTGGTCTCAGCATGTCTGTAGTTAATGAGCAGCCCAGTGCACCGCTGCATTGTGGGTAATGTTAGTGTGTGTTCAGACTGAGCTATTGATGAGCACTCCAGCTGACGGTCCTGCAGTTTGATTCATTATGAAAAAGTCTGACCTGaccggcacacacacacacactcacacacacactcacatgtgtTTGGCTGGGGTTAGTGTGTGTCAGTGCTGCCCTCTAGTGGAGCTGGTCTGCATCTACAGTGGATTTCTGGAGTGTGTTTATTCCTGCTGCGCTTCACACACTGATGAACAGCACACATCAGTCATGACTGCAGCGGCAGAGACATACATCAACAcctttgacacacacacacacactcactcactcactcacacacacactgcagaagcTGTGTTCATATAGCAGTCCTCTGTGCTGAGCTCAGGAGATTTCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019087 True 1376 lncRNA 0.51 2 47296044 47297545

Neighbor

gene id symbol gene type direction distance location
XLOC_008835 gap43 coding upstream 119893 47161917 ~ 47176151 (+)
XLOC_008834 cep57 coding upstream 207620 47083163 ~ 47088424 (+)
XLOC_008833 ecel1 coding upstream 220784 47008307 ~ 47075260 (+)
XLOC_008832 zgc:153039 coding upstream 382969 46853252 ~ 46913075 (+)
XLOC_008831 CR381579.4 coding upstream 489764 46801341 ~ 46806280 (+)
XLOC_008837 CABZ01088337.1 coding downstream 25315 47322860 ~ 47322976 (+)
XLOC_008838 folr coding downstream 44311 47341856 ~ 47350232 (+)
XLOC_008839 CABZ01099833.1 coding downstream 65183 47362728 ~ 47385012 (+)
XLOC_008840 CLPB coding downstream 89394 47386939 ~ 47411807 (+)
XLOC_008841 clpb coding downstream 121020 47418565 ~ 47421836 (+)
XLOC_008463 BX663520.1 misc upstream 26043762 21252191 ~ 21252282 (+)
XLOC_008830 NA non-coding upstream 494860 46799469 ~ 46801184 (+)
XLOC_008829 CR381579.3 non-coding upstream 550855 46695492 ~ 46745189 (+)
XLOC_008828 NA non-coding upstream 633649 46661849 ~ 46662395 (+)
XLOC_008826 CABZ01044047.1 non-coding upstream 700464 46595466 ~ 46595580 (+)
XLOC_008846 CABZ01087560.1 non-coding downstream 311777 47609322 ~ 47614730 (+)
XLOC_008848 CU655829.1 non-coding downstream 424328 47721873 ~ 47725335 (+)
XLOC_008850 NA non-coding downstream 449356 47746901 ~ 47747895 (+)
XLOC_008851 CU633855.1 non-coding downstream 531174 47828719 ~ 47831416 (+)
XLOC_008825 NA non-coding upstream 697180 46385774 ~ 46598864 (+)

Expression


Co-expression Network