Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_000884 |
| gene name | pin1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 59062603 ~ 59065951 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| pin1 | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Acts upstream of or within motor neuron axon guidance and regulation of intrinsic apoptotic signaling pathway in response to DNA damage. Located in cytoplasm and nucleus. Is expressed in brain; head; myotome; post-vent region; and trunk. Orthologous to human PIN1 (peptidylprolyl cis/trans isomerase, NIMA-interacting 1). |
| id | name | namespace |
|---|---|---|
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:1902229 | regulation of intrinsic apoptotic signaling pathway in response to DNA damage | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016853 | isomerase activity | molecular_function |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | molecular_function |
| id | description |
|---|---|
| ko04622 | RIG-I-like receptor signaling pathway |
| ko03021 | Transcription machinery |
| ko03110 | Chaperones and folding catalysts |
| id | description |
|---|---|
| ZDB-GENE-040426-1714 | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Acts upstream of or within motor neuron axon guidance and regulation of intrinsic apoptotic signaling pathway in response to DNA damage. Located in cytoplasm and nucleus. Is expressed in brain; head; myotome; post-vent region; and trunk. Orthologous to human PIN1 (peptidylprolyl cis/trans isomerase, NIMA-interacting 1). |
| ensembl_id | ENSDARG00000101915 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00001383 | False | 743 | mRNA | 0.52 | 3 | 59062603 | 59065948 |
| TCONS_00003276 | True | 326 | lncRNA | 0.47 | 2 | 59065503 | 59065951 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_000883 | cdc37 | coding | upstream | 48550 | 59007536 ~ 59014053 (+) |
| XLOC_000882 | CABZ01083166.1 | coding | upstream | 62364 | 58990121 ~ 59000239 (+) |
| XLOC_000881 | thumpd1 | coding | upstream | 76718 | 58981985 ~ 58985885 (+) |
| XLOC_000880 | eri2 | coding | upstream | 83152 | 58977262 ~ 58979451 (+) |
| XLOC_000879 | NA | coding | upstream | 85916 | 58975017 ~ 58976687 (+) |
| XLOC_000885 | MFAP4 | coding | downstream | 2027 | 59067978 ~ 59072128 (+) |
| XLOC_000886 | MFAP4 | coding | downstream | 7252 | 59073203 ~ 59089598 (+) |
| XLOC_000887 | mfap4 | coding | downstream | 24632 | 59090583 ~ 59092056 (+) |
| XLOC_000888 | FP015850.1 | coding | downstream | 65341 | 59131292 ~ 59131406 (+) |
| XLOC_000889 | NA | coding | downstream | 71932 | 59137883 ~ 59138594 (+) |
| XLOC_000878 | NA | non-coding | upstream | 103146 | 58956066 ~ 58959457 (+) |
| XLOC_000876 | NA | non-coding | upstream | 208226 | 58853170 ~ 58854377 (+) |
| XLOC_000874 | NA | non-coding | upstream | 280311 | 58778053 ~ 58782292 (+) |
| XLOC_000871 | NA | non-coding | upstream | 393528 | 58646685 ~ 58669075 (+) |
| XLOC_000893 | NA | non-coding | downstream | 96014 | 59161965 ~ 59162831 (+) |
| XLOC_000894 | NA | non-coding | downstream | 182179 | 59248130 ~ 59251679 (+) |
| XLOC_000896 | NA | non-coding | downstream | 246579 | 59312530 ~ 59313528 (+) |
