CI01000030_07954583_07955459


Basic Information

Item Value
gene id CI01000030_07954583_07955459
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7954583 ~ 7956474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_07954583_07955459.mRNA
TGACTCTGAAGAGAATCGACTTCACTGGAAACGTCATTTCTGAGATTGAAGATGGTGCGTTTGCTAAGCTTACCATGTTAGAGGAACTCTCGCTAGCCGAAAACCAGCTGGTCAAGCTACCAATGCTACCAACAAAATTAATCTCCTTCAATGCTAATCACAACAAACTCAGGACCAAAGGAATCAAGGCAAATGCTTTCAAGAAATTAAACAAACTGACACATCTGTATCTTGCTCACAATGAACTGGAGGCCGTTCCTTTCATTCCAGAGACTGTCCGGACACTTCACCTTCAGAACAATAACATTTCGTCCGTGACTGTGGACACCTTCTGCAAAGCTAACAACACTTACTACATCCGTCCCAACATGAACGAGATCCGTATGGATGGAAATCCCGTCATCCTCGGCCAGTACCCCAACAGTTTCATATGCCTGCAGTCTCTTCCAATTGGGCGATATCAATGAAAACAGAATCAAAAGTACAACGCAGTGAGAAGTCCTTGGATAGCCAATGATGATGACTAAAACCGAGAAGGAAAAGTCATTCAATCTCCTGGTGCCTGTGCACAATTGAGTGCACAAAAGGTTAATACCATGAGAATCTGTACTATATATCTAATTATGTAACAGCTGCCCAAACACTTAGATTTCCTCTTGATACTGACTTTGTAGATGAACCTGAAACACAAGAATATCTTTATATCCTTTGTAAATAACCACTGGAGGCTACTGCTTAGTAAAATGTGAGATCATGAAAAGCAGCAGTCAAGCTTCTAGTATTCCTCAGAACTCTGTGAATTTCTGACACTTTCTAGTACTGTTAAAATGTCTTACTTTGGTTGAAATTAAGATGCCTGCTAAGTTAATTAGGGGGCGAGGAACCCATTCCAAGTTCCAAGACGCTGGTCTTTCCCAACTGACCTTTTCAATAATTGTTTGAATATTATTTATATGCTAAATTTGTAATTACTACCTATGTGTGAATTAAACATGAATAGACTGTACAGTAAAACAATGTATGAAAACATCATATGTTCACTTTAGTTGTTCAAATACACTTTTTTCTAAAAATGTGTGACTACTTTGCCTTAATCTTTTATAACAGCTATAGCAGGCTGCAGTTAAAGAAAAAAAACAAAAACAAAACAACTGTCTGCAAATTTCAAACCAATCAAACCCAAAGATTGTGCACAAAGAAAGTTCTGGAAAAAGTGGGGTAATATTGTTCCATTTTACTGGCCAAATTGGCAGCCATTACAGCACAATGGTCCCAGCAAATAATGGAATGTTTTTCATACTGCCTCAGAGGCTTCATTCCCAAACTTTCGCTGCCATTGAGTCTTGGAATTTGTTCCCAATCTGACATTCAGCAATCTCAGCAATCTTTCTCATTCTTATGAAAGTCTTATGATATATACCAGTACTCTTTAGAGACAGCAGATTAAGTCCAACTACAAAAGAAAACCTCACAAGAAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_07954583_07955459.mRNA True 1482 mRNA 0.38 3 7954583 7956474

Neighbor

gene id symbol gene type direction distance location
CI01000030_07924704_07945878 ECM2, OMD coding upstream 8644 7924704 ~ 7945939 (+)
CI01000030_07903607_07912664 IPPK coding upstream 41274 7903607 ~ 7913309 (+)
CI01000030_07899071_07899829 NA coding upstream 54263 7899071 ~ 7900320 (+)
CI01000030_07868597_07886123 NA coding upstream 68355 7868292 ~ 7886228 (+)
CI01000030_07842295_07842928 NA coding upstream 111655 7842036 ~ 7842928 (+)
CI01000030_07967106_07968408 NOL8 coding downstream 10632 7967106 ~ 7968584 (+)
CI01000030_07968740_07975571 NOL8 coding downstream 12202 7968676 ~ 7975721 (+)
CI01000030_07990330_08009606 NISCH coding downstream 33856 7990330 ~ 8010155 (+)
CI01000030_08047726_08057237 STAB1 coding downstream 91252 8047726 ~ 8057237 (+)
CI01000030_08133065_08140755 RBCK1 coding downstream 176591 8133065 ~ 8140998 (+)
G161954 NA non-coding upstream 81395 7859914 ~ 7873188 (+)
G161956 NA non-coding upstream 92895 7861182 ~ 7861688 (+)
G161953 NA non-coding upstream 96320 7855627 ~ 7858263 (+)
G161950 NA non-coding upstream 107826 7846196 ~ 7846757 (+)
G161949 NA non-coding upstream 108842 7845492 ~ 7845741 (+)
G161974 NA non-coding downstream 30082 7986556 ~ 7988149 (+)
G162015 NA non-coding downstream 32106 7988580 ~ 7989175 (+)
G161977 NA non-coding downstream 75876 8032350 ~ 8111022 (+)
CI01000030_08155452_08158318 RDH5 non-coding downstream 200362 8155452 ~ 8158709 (+)
CI01000030_08168074_08174577 NA non-coding downstream 212882 8167927 ~ 8174662 (+)
CI01000030_07200104_07202258 GCGA other upstream 752098 7200104 ~ 7202485 (+)
G159816 NA other upstream 3437476 4516778 ~ 4517381 (+)
G159685 NA other upstream 3466057 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 4910810 3018776 ~ 3043773 (+)
G162088 NA other downstream 281491 8237965 ~ 8239604 (+)
G161986 NA other downstream 588108 8544582 ~ 8548325 (+)
G162137 NA other downstream 611536 8568010 ~ 8571726 (+)
G162449 NA other downstream 1399929 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 2086319 10039358 ~ 10047210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020923 ogna coding NC_007133.7 CM002906.2 10454603 ~ 10459880 (-)