XLOC_008844 (sidt2)


Basic Information

Item Value
gene id XLOC_008844
gene name sidt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47525073 ~ 47554887 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017511
CGTGTAatgagggtgtgtgtTTCTCAGGCTGATGCCGGCTCCAGGATGCTGTGGTGGTGCTGTGGTTCCGTGCTTCGGCTGGTCCTGATGCTGGTGTTCTTGTTCTGCTGTCCGGCTGTGAGCTCCACCAATGACGTCGTCCCAGCTCAATTTGACGTCACGTATTTCGACACGGTGACCAGCGAGAAACAGACCATCTACTCCTACAACCACACCGTCTCCAGAAACAAGACGGAGGGTGTGCGGGTGTCGGTGGAGCTGCAGTCTGAGAGCGCACTGAGCCCCATTCTGTTCGTGGTGCGGCAGAAACAGGCCGTTCTGTCCTTCCAGGTGCCTCTCATCCTTAGAGGACTgtatcAGAGGAAGTATCAGTACACACAGGTGAGCCGGACGCTCTGTCAGCCGCCTACTAAAGCCATGTCGGAGACGCAGTTCTTCTATGTGGACGTGTCGACGCTGGCCAGCAGCGGGATCAGCTATCAGCTGCGCGTCAGTCGAGTCGACAGCTTTACTCTGCAGACTGACAAGAAATTCAGCTTCAACGCCACACCGTCTCAACCACAgttcttCAAGTATGTGTTCCCTGAGGGTGTGGACACAGTGATCGTGAAGGTGAACTCACAGAAGAACTTCCCCTGCTCAGTCATGTCCATACAGGACATccagTGCCCAGTGTATGATCTGGATAATAATGTGGCCTTTATTGGGATGTATCAGACTATGACCACCAGATCCGCCATCACAGtgcagAGGAAGGATTTCCCCAGTAACAGCTTCtatgtggtggtggtggtgaagaCTGAAGACGAGGCGTGTGGAGGACCGCTCCGGTTCTACCCCCTGCTGCCCGatGAGCTGCTGGACGCTGGGAATCGCAGTAAGACTCTGGATGTGATTGTTTCTCCTGCCATCAACTCGGAGGTGTATGTGATGGGGATGCTCTTCTGCTTGGGGATCTTCCTGTCCTTCTACCTGCTGACGTTCCTCGTGGCGTGTCTGGAGAATAAGAGGTTTGCTGACTGCACGCTTCCCAACAGGGGGGGTCCCGGCCCACAAGAGGGCCTCGGCGAGCTCTGTGCGTCAGgaaagGCTCCTGTGTCTCCTTATGAATACGGCTCATTTGCTGATAACGGCAGCACACTGAGCTCTGAGGCCGTCACTGACAGCCTGACATCAACTGATGGAAACTATGGATACATGgagcGTTCGCTAGAGAGCATCTCCCGCAGCCGGCAGGAGTCTCTGAGCTCTGTGGAGGAGGACGACTACGACACACTCGCCGACATCGACTCCGACAAGAACATCGTTCgcacaaagAAGTTCCTGTGTGTGTCTGATCTCGCTCGTAAAGACAAACGCATCCTCAGCAAGAAATACCAGATCTACTTCTGgaaCATCGCCACGATCGCAGTGTTCTACGCTCTGCCGGTCATCCAGCTGGTCATCACCTATCAGACGGTTGTGAACGTCACAGGAAACCAGGACATCTGCTATTACAACTTCCTGTGTGCACACCCTCTCGGGGCtctaagCTCCTTCAATAATATCCTGAGTAATCTGGGTTATGTGCTGCTGGGTCTGCTGTTCCTGCTGATCGTCCTGCAGAGGGATATTCTGCACAACCGCGCGCTGGAGCGCAACGACAACACGGCGCTGgagtgTGGTATCCCCAAGCACTTCGGCCTGTATTATGCGATGGGCACAGCTCTGATGATGGAGGGGCTGCTGAGCGCCTGCTACCACGTCTGCCCAAACTACACCAACTTCCAATTCGacacgTCCTTCATGTATATGATCGCTGGATTGTGTATGCTGAAGCTGTATCAGAAGAGACACCCGGACATCAACGCCAGCGCATACTCCGCCTACGCCTGCCTGGCTGCGGTCATATTCTTCTCTGTGCTGGGGGTGgtgTTTGGTAAAGGGAACATGGCCTTCTGGATTGTGTTTTCTGTCATTCACATTCTGGCCACGATGCTGCTGAGCACACAACTCTACTACATGGGCCGCTGGAGACTGGactcTGGCATCATGCGCAGGATGTTGTATGTGATCTACACAGACTGTATCCGCCAGTGCAGTGGACCAATGTACATTgatcgGATGGTTCTGCTGGTGATGGGGAACATTGTGAACTGGTCACTggCGGCGTACGGACTCATCAATCGCCCCAATGACTTCGCCTCGTACCTGTTGGCCATCGCCATCTGTAACCTGCTGCTGTATTTCGCCTTCTACATCATAATGAAGctgcgCAGTGGCGAGCGGATCCAGTGTCTGGCGCTGGTGTGTGTGCTCTTCACCGCTGTGGTTTGGGGTTTCGCTCTGTTCTTCTTCTTTCAAGGTCTCAGCACATGGCAGaaaacTCCCGCTGAATCTCGAGAGCACAACCGCGAGTGTATCCTGCTGTCCTTCTTCGACGATCACGATATCTGGCACTTCCTGTCCTCCATCGCCATGTTTGGGTCCTTCCTGGTTCTGCTCACTATGGACGACGACCTCGACTCAGTTCAAAGAGACAAAATATACGTCTTCTGA

Function

symbol description
sidt2 Predicted to enable RNA transmembrane transporter activity and double-stranded RNA binding activity. Predicted to be involved in RNA transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome and plasma membrane. Is expressed in anterior axial hypoblast; hatching gland; mesoderm; polster; and yolk syncytial layer. Orthologous to human SIDT2 (SID1 transmembrane family member 2).

GO:

id name namespace
GO:0050658 RNA transport biological_process
GO:0033227 dsRNA transport biological_process
GO:0005764 lysosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003725 double-stranded RNA binding molecular_function
GO:0051033 RNA transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7356 Predicted to enable RNA transmembrane transporter activity and double-stranded RNA binding activity. Predicted to be involved in RNA transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome and plasma membrane. Is expressed in anterior axial hypoblast; hatching gland; mesoderm; polster; and yolk syncytial layer. Orthologous to human SIDT2 (SID1 transmembrane family member 2).

Ensembl:

ensembl_id ENSDARG00000045976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017511 True 2538 mRNA 0.54 27 47525073 47554887

Neighbor

gene id symbol gene type direction distance location
XLOC_008842 phox2a coding upstream 75825 47440477 ~ 47449248 (+)
XLOC_008841 clpb coding upstream 103237 47418565 ~ 47421836 (+)
XLOC_008840 CLPB coding upstream 113266 47386939 ~ 47411807 (+)
XLOC_008839 CABZ01099833.1 coding upstream 140061 47362728 ~ 47385012 (+)
XLOC_008838 folr coding upstream 174841 47341856 ~ 47350232 (+)
XLOC_008845 CABZ01087566.1 coding downstream 27320 47582207 ~ 47583796 (+)
XLOC_008846 CABZ01087560.1 coding downstream 54435 47609322 ~ 47614730 (+)
XLOC_008847 paf1 coding downstream 63334 47618221 ~ 47623452 (+)
XLOC_008848 CU655829.1 coding downstream 166986 47721873 ~ 47725335 (+)
XLOC_008849 stard10 coding downstream 191289 47746176 ~ 47774711 (+)
XLOC_008463 BX663520.1 misc upstream 26272791 21252191 ~ 21252282 (+)
XLOC_008837 CABZ01088337.1 non-coding upstream 202097 47322860 ~ 47322976 (+)
XLOC_008836 NA non-coding upstream 227528 47296044 ~ 47297545 (+)
XLOC_008831 CR381579.4 non-coding upstream 718793 46801341 ~ 46806280 (+)
XLOC_008830 NA non-coding upstream 723889 46799469 ~ 46801184 (+)
XLOC_008829 CR381579.3 non-coding upstream 779884 46695492 ~ 46745189 (+)
XLOC_008850 NA non-coding downstream 192014 47746901 ~ 47747895 (+)
XLOC_008851 CU633855.1 non-coding downstream 273832 47828719 ~ 47831416 (+)
XLOC_008853 NA non-coding downstream 295992 47850879 ~ 47852351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000230_00251591_00261705 SIDT2 coding CI01000230 null 250973 ~ 262149 (+)
bowfin (Amia calva) AMCG00004599 sidt2 coding CM030121.1 CM030121.1 54394475 ~ 54398918 (-)