CI01000030_08133065_08140755 (RBCK1)


Basic Information

Item Value
gene id CI01000030_08133065_08140755
gene name RBCK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8133065 ~ 8140998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08133065_08140755.mRNA
ATGCCTTACGTTAACATGGCAGCGGAGGACGCCGCACGGCTGCTGAGTGACGCCATTAACTCCAGAGACAAAGATGAAGCGACTAAACACCTGGATCGACTTCTGGATTTGAAACTCCCTGTGTGCGTCAAAATAAATCCCGATGCGTACTCTAAAGACAGCATCAGGTATGCTGTTAGACCGGTTCTATTGCGATTGAGAGTAGGAGTGGCGGACGCCGTGTCAGACACCCACATCCCAATCACAGTGATGGTTCCGGTGTACCTGACGGTATCAGAGCTGAAAGAAAAAATTAATCGTGACTATGGCTTCCACCCGGCTCTCCAGCGCTGGGTGATCGGGAAGCGTCTCGCCCAAGATAAAGACACCCTGTATCATTATGGAGTCAGAGACCATGACGATTCGGCCTTCCTCTTCATCCTTTCAGCCCAGGCTGCCCATCTGAGCCGTGAACAAGAGAGAAAAGAGAAAGAGGACAGACGGATTGATGGTTGCGAGATATGCAGCACGGCGAGACCTGAAAACTATATAGTGCCGGACGTGTACCAGCCGGATGAGGCGGAAACCAGGAGACTCCAGCAGGAGGAACTTGCCAGCCTGCAGTACGAGCAGTCTCTGATAGAAGAACGGAAGAAGAATTTCCAAGAACTCCTGGAAACAGATTGCCAGAGTCTGGTGGGGAACACAGATCAGCTGGATTGCGCCATCTGCTTTTGCACCATCATGCCAGGAGAGGGCGCCGTGCTGAGAGAGTGCCTGCATAGCTTCTGCAGAGACTGTCTGAAGGAAACTGTTCTGAACTGCATGGATGCCGAGGTGGCGTGTCCCTATAGAGACAACGCTTATTCCTGTAACTGCAAACTTCAAGATCGAGAAATCAAATCACTTCTCTCTCAGGACGAGTACCAGAAGTTTCTCGAACTGAGGCTGAACATCGCAGAGTCGCGCAGTGAGAACAGTTACCACTGCAAGACGCCCGACTGCGCCGGCTGGTGCATCTTCGAAGATGACGTGAACGAATTCACGTGTGACATCTGCAGTGAGACCAACTGCATCCTCTGCAAGGCTATTCACAAGGGAATGAACTGCCAGGAGTACCAGGACGACCTCCGTATACGAGCGCAGAATGACGATGCAGCCCGGCAGACCACGCAGATGCTGGATCAACTCCTGAATAACGGCGAGGCGATGAACTGTCCTAAATGTCAGGTGATCGTCCAGAAGAAAGACGGCTGTGACTGGATCTGTTGTCTGATGTGTAAGACCGAGATCTGCTGGGTGACTAAACAAGCCCGATGGGGACCAAAGGGTGCTGGAGACATATCAGGTGGTTGCAAATGTCGAGTGAACGGAGTCCTCTGCCATCCGCAGTGCCAGAACTGCCACTGAACACTGGCGGCATCGCTGAACGCTGCTCCTTCAACAAGCAAAAACCTGCGCTACAGTAACACAGCACTTACCAAGCTCCTTAAAATAATCCAGGTAAGGTTGATGTGCAACATACAGTTTGTGTTTGTACCTTTAAAACATTCACTCCCTCTAGTCATATCACTGGCACATCAATCAGAATGCATGTACTTTCTAGAAAGAGTTCATGTTCCAAGACTAAAGATTCAGAACATGTTTACAAAA

Function

symbol description
rbck1 Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be part of LUBAC complex. Is expressed in pharyngeal arch. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1).

NR:

description
RanBP-type and C3HC4-type zinc finger-containing protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08133065_08140755.mRNA True 1632 mRNA 0.50 10 8133065 8140998

Neighbor

gene id symbol gene type direction distance location
CI01000030_08047726_08057237 STAB1 coding upstream 75828 8047726 ~ 8057237 (+)
CI01000030_07990330_08009606 NISCH coding upstream 122910 7990330 ~ 8010155 (+)
CI01000030_07968740_07975571 NOL8 coding upstream 157344 7968676 ~ 7975721 (+)
CI01000030_07967106_07968408 NOL8 coding upstream 164481 7967106 ~ 7968584 (+)
CI01000030_07954583_07955459 NA coding upstream 176591 7954583 ~ 7956474 (+)
CI01000030_08150901_08154024 GM7936 coding downstream 9903 8150901 ~ 8154024 (+)
CI01000030_08155452_08158318 RDH5 coding downstream 14454 8155452 ~ 8158709 (+)
CI01000030_08159242_08166884 GLS2B coding downstream 18244 8159242 ~ 8166945 (+)
CI01000030_08168074_08174577 NA coding downstream 26929 8167927 ~ 8174662 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 414381 8555379 ~ 8559397 (+)
G161977 NA non-coding upstream 22043 8032350 ~ 8111022 (+)
G162015 NA non-coding upstream 143890 7988580 ~ 7989175 (+)
G161974 NA non-coding upstream 144916 7986556 ~ 7988149 (+)
G161954 NA non-coding upstream 259877 7859914 ~ 7873188 (+)
G161956 NA non-coding upstream 271377 7861182 ~ 7861688 (+)
G162074 NA non-coding downstream 46382 8187380 ~ 8187595 (+)
G162080 NA non-coding downstream 56746 8197744 ~ 8198028 (+)
G162087 NA non-coding downstream 96340 8237338 ~ 8237683 (+)
CI01000030_07868597_07886123 NA other upstream 260293 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 930580 7200104 ~ 7202485 (+)
G159816 NA other upstream 3615958 4516778 ~ 4517381 (+)
G159685 NA other upstream 3644539 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 5089292 3018776 ~ 3043773 (+)
G162088 NA other downstream 96967 8237965 ~ 8239604 (+)
G161986 NA other downstream 403584 8544582 ~ 8548325 (+)
G162137 NA other downstream 427012 8568010 ~ 8571726 (+)
G162449 NA other downstream 1215405 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1901795 10039358 ~ 10047210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location