CI01000030_08155452_08158318 (RDH5)


Basic Information

Item Value
gene id CI01000030_08155452_08158318
gene name RDH5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8155452 ~ 8158709 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08155452_08158318.mRNA
TAGCGATTGCTCATGGACGTGCGGCTTGGGTGCGTTTGTGGTGTTGTGGGTTCTGGTGTGGTTCTACCGGGACAACCTTGAGATTACCAGGGTCTCAGAGAAGCACGTCTTTGTGACCGGTTGTGACTCTGGTTTCGGACACCTACTGTGTAAACGCCTGGACAAACGTGGTTTCCGCGTCCTAGCCGGGTGTCTCACGGAAAAGGGTGCTGATGATCTGAAGAGGGCGACGGGACCTTTCCTGAAGACCTGCATCTTGGACGTGACCAGCACAACCAGCATTCAGAAGGCTGTGGAATGGACCAAAAAAGAAGTTGGAGATAAAGGACTTTGGGGTTTGGTGAACAACGCCGGACGTTCTCTTCCAATGGGACCATCTGAGTGGATGAAAATTGAAGACTTTGAAAGCACACTCAAAGTCAACATGACTGGCGTGATCGAGACGACCATGAACTTCTTCCCTCTTGTGAAAAAGGCCCGTGGAAGAGTGGTGAACGTGGCGTCAGTGTTGGGTAGAGTGGCAGCTAATGGCGGTGGTTATTGCATCTCGAAGTTCGCTGTGGAGAGCTTCTCCGACTGTCTCAGAAGGGACATCCAGAATTTTGGTGTCAACGTGTGCATCATTGAACCTGGTTTCTTCAAAACGCAGGTGACCAGCTTGGAGCCCATCGAGAGGGAACTTCATCGCCTCTGGAACCAACTGACCCCCGAAGTGAAGGAGAGTTACGGAGACAAATACTTGGATAAATACATCAAGATCCAGAGGTTGATCATGAACGCCATATGCGACTCCGACCTCAGTAAAGTGACCAACTGCATGGAACACGCCCTGCTGGCCGTCCACCCAAGAACACGCTACAGTGCAGGCTGGGATGCCAAGCTCTTGTGGATCCCCTTGTCTTATATGCCCGCTTGTTTTGTAGATATTGCGCTTAAGCTGGTGATGCCAAAGCCAGCAAAAAGTGTCTAGATTTGGTGTGTGATTAAAAGTAATTTTAGGCCAGATACTTTTAACTCTTACCTTTGGTTCCCTTCTGATACACTGGAAGATGCTCTATATATGCTCTAATCTTAAATTATTCCAAACTTTTGACCAGTAGTGTATCTCCACACCAAGCCCTTTATCTTATTTCTCATTGGCATGTTCTTGCCTAATAAGTGACATTTGCCTTAACTTGCCTTGAAAATGCATCACCAATTTGTGCCTGTTGGTCATCTGCTGTATGTGTTGCTAGAGTGCCACAGTAACTTTGACTTTTGGCATTATATATTTTGTATGAAACTGTCAGAGATTGCTTGACCTGCCACATTATGATTATTTTAACGGAAAATTTGCAGGCAAACTGTATAAACATAATTTA
>TU184032
GCATATACTTTGCAAACTCGAGGCACAAAAGCGTTTTAATTCCTCGAACAACACAATAATTAAAACGATACATACCAAATAGCAATAAAAATATGTAGCCTACATCTGTAGCTTATTGATGTGTAACAAAGACTTTGAGTGTACTCACCATCAAAATAGTTGAAGGCAGCGGGTCTCTGAGCGATAGTCATTTATAGATATAGCCTAATTATGTTTCAAGTTTCGTTTTGTGTAATAATGCATTAACTATTAATTTTCTGATCATAGGCAGAGGGTGAACCAACTCCAGGGTAAGGAGATGCGATTCCCATTTACAAACACATTTAAATAGATTTCCTTGAAATAGTTTTAAGTTAGGCCTACTTGCCACTGCACAATCTACATATCCCAACATACACTGCTGATAAATTATTTGTTATTAAAGCGTCTACATTCACAAACCGCTGTTAATTTTAATAGATTACGTTCACGGGATTTGGCAGAAAGCACGCGAAGGGTGTTCACTAATCACTAAAAATCTCATCTTAGTTCATCGTGATCTCAAGACATTCTGTAACAATAAATTAAACTGCATAATGAATCTCTTATTCATAATTGTTTGTTACAGTGTGCAGAACTATCTAATCTACTCACCGTTCAAAACGTTCAAAAGTTTTTGTTCAGCGCTAATTTAAACCCCTCTGATTGGTCATTGCGTTCAAGAAATCAACAGATATGTTTGTAATTGGCTACATTGCTAAACGCTGCAAAAAAACATTGTAAAGCCTTGTCGTTCTTCAGAGCGCAAACACAGATATGCACTGGATCGTTTGCCAAATATGTTTTGCTGATAATATGGAGAAAACTGATCCTAGACCAGTAGTTACGGGCCAAAATTCCAAGCTTGGAGCCCTTCCCCCGGACAGCACGCCAAATATGTATAACCTTTACTCTATCTAATTATATGTAAGTGTGAACTTGTGAAACTGTTTTATCTTTGATGCCACCACTACTTTCAACTTTTTTTCATTTCATTTCAGAAGGGACATCCAGAATTTTGGTGTCAACGTGTGCATCATTGAACCTGGTTTCTTCAAAACGCAGGTGACCAGCTTGGAGCCCATCGAGAGGGAACTTCATCGCCTCTGGAACCAACTGACCCCCGAAGTGAAGGAGAGTTACGGAGACAAATACTTGGATAAATACATCAAGATCCAGAGGTTGATCATGAACGCCATATGCGACTCCGACCTCAGTAAAGTGACCAACTGCATGGAACACGCCCTGCTGGCCGTCCACCCAAGAACACGCTACAGTGCAGGCTGGGATGCCAAGCTCTTGTGGATCCCCTTGTCTTATATGCCCGCTTGTTTTGTAGATATTGCGCTTAAGCTGGTGATGCCAAAGCCAGCAAAAAGTGTCTAGATTTGGTGTGTGATTAAAAGTAATTTTAGGCCAGATACTTTTAACTCTTACCTTTGGTTCCCTTCTGATACACTGGAAGATGCTCTATATATGCTCTAATCTTAAATTATTCCAAACTTTTGACCAGTAGTGTATCTCCACACCAAGCCCTTTATCTTATTTCTCATTGGCATGTTCTTGCCTAATAAGTGACATTTGCCTTAACTTGCCTTGAAAATGCATCACCAATTTGTGCCTGTTGGTCATCTGCTGTATGTGTTGCTAGAGTGCCACAGTAACTTTGACTTTTGGCATTATATATTTTGTATGAAACTGTCAGAGATTGCTTGACCTGCCACATTATGATTATTTTAACGGAAAATTTGCAGGCAAACTGT

Function

symbol description
rdh5 Predicted to enable oxidoreductase activity. Acts upstream of or within eye photoreceptor cell differentiation; retina development in camera-type eye; and vitamin A biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gut; heart; pineal complex; skeletal muscle cell; and visual system. Human ortholog(s) of this gene implicated in fundus albipunctatus and night blindness. Orthologous to human RDH5 (retinol dehydrogenase 5).

NR:

description
retinol dehydrogenase 5

GO:

id name namespace
GO:0035238 vitamin A biosynthetic process biological_process

KEGG:

id description
K00061 RDH5; 11-cis-retinol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08155452_08158318.mRNA False 1361 mRNA 0.47 4 8155452 8158709
TU184032 True 1781 lncRNA 0.39 2 8156836 8158695

Neighbor

gene id symbol gene type direction distance location
CI01000030_08150901_08154024 GM7936 coding upstream 1428 8150901 ~ 8154024 (+)
CI01000030_08133065_08140755 RBCK1 coding upstream 14454 8133065 ~ 8140998 (+)
CI01000030_08047726_08057237 STAB1 coding upstream 98215 8047726 ~ 8057237 (+)
CI01000030_07990330_08009606 NISCH coding upstream 145297 7990330 ~ 8010155 (+)
CI01000030_07968740_07975571 NOL8 coding upstream 179731 7968676 ~ 7975721 (+)
CI01000030_08159242_08166884 GLS2B coding downstream 533 8159242 ~ 8166945 (+)
CI01000030_08168074_08174577 NA coding downstream 9218 8167927 ~ 8174662 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 396670 8555379 ~ 8559397 (+)
CI01000030_08763819_08775586 NA coding downstream 605021 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 678512 8837221 ~ 8838451 (+)
G161977 NA non-coding upstream 44430 8032350 ~ 8111022 (+)
G162015 NA non-coding upstream 166277 7988580 ~ 7989175 (+)
G161974 NA non-coding upstream 167303 7986556 ~ 7988149 (+)
G161954 NA non-coding upstream 282264 7859914 ~ 7873188 (+)
G162074 NA non-coding downstream 28671 8187380 ~ 8187595 (+)
G162080 NA non-coding downstream 39035 8197744 ~ 8198028 (+)
G162087 NA non-coding downstream 78629 8237338 ~ 8237683 (+)
G162091 NA non-coding downstream 90969 8249678 ~ 8249892 (+)
CI01000030_07868597_07886123 NA other upstream 282680 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 952967 7200104 ~ 7202485 (+)
G159816 NA other upstream 3638345 4516778 ~ 4517381 (+)
G159685 NA other upstream 3666926 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 5111679 3018776 ~ 3043773 (+)
G162088 NA other downstream 79256 8237965 ~ 8239604 (+)
G161986 NA other downstream 385873 8544582 ~ 8548325 (+)
G162137 NA other downstream 409301 8568010 ~ 8571726 (+)
G162449 NA other downstream 1197694 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1884084 10039358 ~ 10047210 (+)
G161956 NA non-coding upstream 295148 7861182 ~ 7861688 (+)

Expression


Co-expression Network