CI01000030_08168074_08174577


Basic Information

Item Value
gene id CI01000030_08168074_08174577
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8167927 ~ 8174662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08168074_08174577.mRNA
GTTTAAAAAGAGCATCAGAAAGGAACTGAAGTCCATTTTTGTCAACTGATTGATACTTCCTCATAACAGTACGAGCGGCCATTGGCTGAATCTTCTGCACATCCTCTGTTTGTGAACTGAAACCACAGTAACAGTCACTTTTCTAAGATGCTCACAGACATGCAGTGTTTAATCTTGCTCCTCATGTGTGTGGAAGGTGTGTTTGGTGATTCAGATGGAGTGAAGTCAGTGTCAGTGCTGGAAGGAGATTCTGTCACTCTACAGAATAATGTTACTGAAGTACAGAGAGATGATCAGATACTGTGGATGTTTGGACCTCGAGAGACTCGAATAGCTGAACTCTATAAGAAGATCATTGATATGTTTGGCAGTAATGTGACCTTTGGAGACAGACTCCAGATGGACAGTCAAACTGGATCTCTGACCATCAGAAACATCAGATCTGAACACTCTGGACTTTATAAACTACAGATCCGCAGTGACAGAGGGAACTCAGACAAGAGATTCAATGTTACTGTCTACGCTCCACTGCCCATTCCCATCATTACTGGATCCTCCCAACAATGTTCAGTGTCCAATTGTTCATTGGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGATCAACAATCCCATCAGAAACCAGACTCAACATCTGGACAATATCACTCAACTCTGTCACACATGTGAAGACTCCTACATTCATTCTGAAGATGTGACTCCATCGCTGGTTTATGCTCTGGTAGGCGTCACCGCTGTTGCTCTACTCGTTTATTACGTCAGATACAGAAGAAAAAAGCCACCATCACAACCTCGCTGACGCCATTCTCTTCTGTGGACACTAGGTGGCAATAACTCATAATTGTTCAATCGTAATCGTGGGACGTGGGCACTTTACAAAGTAA
>TU184031
ATTGTTCATTGGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGATCAACAATCCCATCAGAAACCAGACTCAACATCTGGACAATATCACTCAACTCTGTC
>TU184030
GCAGCCATTTGATAAAAAGAGTCTTCATAATGTTGTCTTTTCTTTCCCCAGACTCCTACATTCATTCTGAAGATGTGACTCCATCGCTGGTTTATGCTCTGGTAGGCGTCACCGCTGTTGCTCTACTCGTTTATTACGTCAGATACAGAAGAAAAAAGCCACCATCACAACCTCGCTGACGCCATTCTCTTCTGTGGACACTAGGTGGCAAT

Function

NR:

description
Si:ch211-222k6.3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08168074_08174577.mRNA False 1021 mRNA 0.43 4 8167927 8174662
TU184031 False 219 lncRNA 0.43 1 8169356 8169574
TU184030 True 212 lncRNA 0.45 1 8174399 8174610

Neighbor

gene id symbol gene type direction distance location
CI01000030_08159242_08166884 GLS2B coding upstream 982 8159242 ~ 8166945 (+)
CI01000030_08155452_08158318 RDH5 coding upstream 9218 8155452 ~ 8158709 (+)
CI01000030_08150901_08154024 GM7936 coding upstream 13903 8150901 ~ 8154024 (+)
CI01000030_08133065_08140755 RBCK1 coding upstream 26929 8133065 ~ 8140998 (+)
CI01000030_08047726_08057237 STAB1 coding upstream 110690 8047726 ~ 8057237 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 380717 8555379 ~ 8559397 (+)
CI01000030_08763819_08775586 NA coding downstream 589068 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 662559 8837221 ~ 8838451 (+)
CI01000030_08845484_08861801 NA coding downstream 670822 8845484 ~ 8861801 (+)
CI01000030_08862264_08875155 NA coding downstream 687602 8862264 ~ 8875155 (+)
G161977 NA non-coding upstream 56905 8032350 ~ 8111022 (+)
G162015 NA non-coding upstream 178752 7988580 ~ 7989175 (+)
G161974 NA non-coding upstream 179778 7986556 ~ 7988149 (+)
G161956 NA non-coding upstream 306239 7861182 ~ 7861688 (+)
G162074 NA non-coding downstream 12718 8187380 ~ 8187595 (+)
G162080 NA non-coding downstream 23082 8197744 ~ 8198028 (+)
G162087 NA non-coding downstream 62676 8237338 ~ 8237683 (+)
G162091 NA non-coding downstream 75016 8249678 ~ 8249892 (+)
G162092 NA non-coding downstream 75336 8249998 ~ 8250302 (+)
CI01000030_07868597_07886123 NA other upstream 295155 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 965442 7200104 ~ 7202485 (+)
G159816 NA other upstream 3650820 4516778 ~ 4517381 (+)
G159685 NA other upstream 3679401 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 5124154 3018776 ~ 3043773 (+)
G162088 NA other downstream 63303 8237965 ~ 8239604 (+)
G161986 NA other downstream 369920 8544582 ~ 8548325 (+)
G162137 NA other downstream 393348 8568010 ~ 8571726 (+)
G162449 NA other downstream 1181741 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1868131 10039358 ~ 10047210 (+)
G161954 NA non-coding upstream 296168 7859914 ~ 7873188 (+)

Expression


Co-expression Network