XLOC_008847 (paf1)


Basic Information

Item Value
gene id XLOC_008847
gene name paf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47618221 ~ 47623452 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017515
gttcTGCTGGATCCTGCTGATGAGAAGCTGCTGGAGGAGGAGATCCAGGCTCCATCCAGCTCAAAgaggtcaCAGCAGCATGCGAAGGTGGTGCCGTGGATGAGGAAGACGGAGTACATCTCCACTGAGTTCAACAGATACGGCGTCTCCAACGAGAAGGTGGAAGTCAAgatcgGTGTGTCCGTCAAGCAGCAGTTCACAGAGGAGGAGATCTATAAAGACAGAGACAGTCAGATCGCTGCCATTGAGAAGACCTTCGAAGACGCTCAGAAATCAATTTCCCAGCATTACAGCAAACCCAGAGTCACACCGGTGGAGGTGCTGCCCGTCTTCCCTGACTTCAagATGTGGATTAATCCGTGTGCTCAAGTCATCTTTGATTCTGATCCGGCTCCTAAAGATGTGTCTGCACCGGCTGGAGTGGACATGATGTCACAGGCCatgatcaggtatgatgatgatgatgatgatgatgtatatatacacacacacacacacacacacacacgactgacAATCCACTGTGATGACGTGTGTGAGGCTGTctgtaacgtgtgtgtgtgtgtgtatgAATATAAGATTGCTCGTGAGTATAACTGGAACGTGAAGAACAAGGCCAGTAAAGGATACGAGGAGAACTACTTCTTCATCTTCAGAGACGCAGATGGAGTTTATTATAATGAGCTGGAGACCAGggtgcGTCTGAGCAAGCGGCGGGCGAAGGTTGGCGCTCAGTCATCCACAAACGCAGTGCTGGTGTGTAAACACAGAGATATGAATGAGAAGGAGCTGGAGGCTCagGAGGCTCGCAAGGCTCAGCTGGAGAACCACGAGCCggaggatgaagaggaggagctggacCTGGAGAAGGACATGCAGGAGGACTCGGGCGAGGAGCGCGAGAAGCCCAGCGACTCTGAAAACTCTGAGAGTGAGTCTGAGCGTGAGGAGGAGGAGCGTCCTGCTGATGAagatgaggaagaggaagaggatgAGGAGAGCGTGAAGCGGCGGCGTGAGAGGAAGAGCAGCGGCAGCGAGAGCGGAGACGACCGGCAGGCCCGTGACGAGGAGGAGATCTTTGGTAGCGATGACGACAgcgaagaggaggaggaggaagaagaggagggcGGAGCCAGGAGGCGGAGCAACAGCAGCAGCGTCCAGCATAGCGCCAGCGAGCGTGCATCTGACTCCAGTGACGCCAGCGACTCCGACTGA

Function

symbol description
paf1 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Involved in heart development. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0016570 histone modification biological_process
GO:0035327 transcriptionally active chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0016593 Cdc73/Paf1 complex cellular_component
GO:0003682 chromatin binding molecular_function
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
ko04011 MAPK signaling pathway - yeast
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-050506-101 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Involved in heart development. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component).

Ensembl:

ensembl_id ENSDARG00000098432

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017515 True 1221 mRNA 0.54 11 47618221 47623452

Neighbor

gene id symbol gene type direction distance location
XLOC_008846 CABZ01087560.1 coding upstream 3491 47609322 ~ 47614730 (+)
XLOC_008845 CABZ01087566.1 coding upstream 34425 47582207 ~ 47583796 (+)
XLOC_008843 sik3 coding upstream 42816 47492838 ~ 47575405 (+)
XLOC_008844 sidt2 coding upstream 63334 47525073 ~ 47554887 (+)
XLOC_008842 phox2a coding upstream 168973 47440477 ~ 47449248 (+)
XLOC_008848 CU655829.1 coding downstream 98421 47721873 ~ 47725335 (+)
XLOC_008849 stard10 coding downstream 122724 47746176 ~ 47774711 (+)
XLOC_008850 NA coding downstream 123449 47746901 ~ 47747895 (+)
XLOC_008851 CU633855.1 coding downstream 205267 47828719 ~ 47831416 (+)
XLOC_008852 CU682604.1 coding downstream 215384 47838836 ~ 47875713 (+)
XLOC_008463 BX663520.1 misc upstream 26365939 21252191 ~ 21252282 (+)
XLOC_008837 CABZ01088337.1 non-coding upstream 295245 47322860 ~ 47322976 (+)
XLOC_008836 NA non-coding upstream 320676 47296044 ~ 47297545 (+)
XLOC_008831 CR381579.4 non-coding upstream 811941 46801341 ~ 46806280 (+)
XLOC_008830 NA non-coding upstream 817037 46799469 ~ 46801184 (+)
XLOC_008853 NA non-coding downstream 227427 47850879 ~ 47852351 (+)
XLOC_008854 NA non-coding downstream 234162 47857614 ~ 47858171 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000468_00000504_00006254 PAF1 coding CI01000468 null 504 ~ 6279 (+)
bowfin (Amia calva) AMCG00013541 paf1 coding CM030125.1 CM030125.1 35129171 ~ 35136494 (-)
mexican tetra (Astyanax mexicanus) G4582 paf1 non-coding NC_035897.1 CM008300.1 18258571 ~ 18306252 (+)