XLOC_008848 (CU655829.1)


Basic Information

Item Value
gene id XLOC_008848
gene name CU655829.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47721873 ~ 47725335 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017516
AAAACTGAGTCATTTACTTCAAACCATTGTACAGTCGTGGCCAAAAGTTTTGAGAATGACACAAATATTAGTTTTCACAAAAGTTTGCTGCTAAACTGCTTTTAGATCTTTGTTTCTGTGGTTTACTGAAATATAATTACAAGCACTTTATAtgtttcaaaggcttttatcgACAATTACATGACATTTATGAAAAGAGTCACActgcaaaaactgcttttcttacttcgattttttttctcgtttctaTGTGGGCATGCTCTCAATCCACTTCTGGGCCAGATCCTGACTGATAGCGACCCATTCTTTCATAATCACTTCTTGGAGTTTGTCAGAATTAGTGGGTTGTTGTTTGTCCACCCGCCTCTTTAGGACTGACCACAAATTCTCAATGGGATTAAGATTAGGGGAGTTTCCAGGCCAAGGACTCAAAATTTCAACGTTTTAGTCTCCGAGCCACTTAGATATCACTTTTGCCTTATGGCAAGGTGCTCCATCATGCTGAAAAATGCATTGTTCTTTACCAAACTGTAGTTTGATTGTTGGAAGTTGCTGTTGGAGGGTGTTTTGGTACCATTCTTTATTCATGGCTGTGTTTTTGGGCAAAATCATAAATGAGCCCACTCCCTTGGATGAGAAGAAACCCCACACATGAAGGATGTTTTACTGTTAGCATGACACAGGACTGATGGCAGCGCTCACCTTTTCTTCTCCGGACAAGCCTTTTTCCAGATGCCCCAAACAATTGGACAGGGGCTTCATCAGAGAATATGACTTTGCCCCAGTCTTCAACAGTCCATTCGCCATACTGTTTGCAGAAGATTAATCTGTCCCAGTGGTTTCTTTGCTGCCCTTCTTGACACTAGGCCATCTTCCAAAAGTCTTCGCCTTACTGTGTGTGCAGATGCGCTTACACCTGCCTGCTGCTATTCCTGAGCAAGCTCTGATCCCGCAGCTGAATCCTCTTTAGGAGTCGATCCTGGCACTTGCTGGACTTTCTTGGACGCCCTGAAGCCTTCTTAACCAGAATTGAACCTCTTTCCTTGAAGTTCTTGATGATCTTATAAATTGTTGATTTAGGAGCAATCTTACTTGCCACAATATCCTTGCCTGTGAAGCCATTTTTATGCAATGCAATGATGGCTGCATGCGTTTCTTTGGAGGTCACCATGGTTAACAAGGGAAGAACAATGATTTCAAGCATCACCCTTCTTTTAACATGTCAAGTCTGCCATTCTAACCCAATCAGCCTGACATAATGATCTCCAGCCATGTGCTCATCAACATTCTCCCCCGActttaacaAGACGATTACTGAAATGATCTCAGCAGgttgcATAGCTGAAATTTCAAGCCCTGTCCTTTAATGACAGCAATGAAATGCAGTTGATTTCAGGATTCAGTTAATTTTCATGGCAAAGAAGGAGTGTGCAATTCATCTGATCACTCTTCATAACATTCTGGAGTATATGCAAACTGCTATTATAAAAACTTAAGCAGTAACTTTTCCGATTTCCAATACTTATGTAATTCTCAAAACTTTTGTCCAGGACCAGACATTCTCCTactggaaaatatatatttatattgatttgttttacaattattaattttgttttattttacgttAAAAAcgtaacaataaaacaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017516 True 1651 lncRNA 0.40 4 47721873 47725335

Neighbor

gene id symbol gene type direction distance location
XLOC_008847 paf1 coding upstream 98421 47618221 ~ 47623452 (+)
XLOC_008846 CABZ01087560.1 coding upstream 107143 47609322 ~ 47614730 (+)
XLOC_008845 CABZ01087566.1 coding upstream 138077 47582207 ~ 47583796 (+)
XLOC_008843 sik3 coding upstream 146468 47492838 ~ 47575405 (+)
XLOC_008844 sidt2 coding upstream 166986 47525073 ~ 47554887 (+)
XLOC_008849 stard10 coding downstream 20841 47746176 ~ 47774711 (+)
XLOC_008850 NA coding downstream 21566 47746901 ~ 47747895 (+)
XLOC_008851 CU633855.1 coding downstream 103384 47828719 ~ 47831416 (+)
XLOC_008852 CU682604.1 coding downstream 113501 47838836 ~ 47875713 (+)
XLOC_008853 NA coding downstream 125544 47850879 ~ 47852351 (+)
XLOC_008463 BX663520.1 misc upstream 26469591 21252191 ~ 21252282 (+)
XLOC_008837 CABZ01088337.1 non-coding upstream 398897 47322860 ~ 47322976 (+)
XLOC_008836 NA non-coding upstream 424328 47296044 ~ 47297545 (+)
XLOC_008831 CR381579.4 non-coding upstream 915593 46801341 ~ 46806280 (+)
XLOC_008830 NA non-coding upstream 920689 46799469 ~ 46801184 (+)
XLOC_008854 NA non-coding downstream 132279 47857614 ~ 47858171 (+)
XLOC_008855 NA non-coding downstream 156635 47881970 ~ 47883643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51270 NA non-coding CI01000009 null 2399778 ~ 2400894 (+)
rainbow trout (Oncorhynchus mykiss) G789863 LOC100194703 unknown NC_048573.1 CM023227.2 28528820 ~ 28652471 (-)
tiger barb (Puntius tetrazona) G39503 NA non-coding NC_056703.1 CM032072.1 25557296 ~ 25557522 (-)