XLOC_008849 (stard10)


Basic Information

Item Value
gene id XLOC_008849
gene name stard10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47746176 ~ 47774711 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017517
GCTCGTGCTGCATCACTCCGGGAAACACGTACGCGTTTATCActtcccacacacactcatatatgaGGATATTTACACACAGTCGCGCGCGTTTAGCAGGATATTTAAACTCACGCGCGCGACACACGCCTGCGGGAAACGCGCATTTCAGCATATGTTTGCAGACCAGACGGAGAAACCGCCCGTGCGCTCCTCCACCTCACAGAGAGACACAGGCAAACCGCAGGAAAAGTCAACTTTAAAGCAAACTCTCAGCTTTCATCCACACCGGGGTCCGCTTTGATCTGCGTCGCCGCGGCTCCGGGAGCGGGAACCGcaggaggaggatgatgatgatgaaaaccGGGGATGAAGAGGTTCTGATCCCGGACGACCGAGCATTCAGCCGGTTCAAACACGAGTGTGAGGCGGAGGCGGGCTGGACTGTCACACACAACAAGAGCAACATCTGCGTGTGGATCCAGCTGCTGGAGGAGGACAAGAGTTTACACAAGATCAAG
>TCONS_00017518
GCTCGTGCTGCATCACTCCGGGAAACACGTACGCGTTTATCActtcccacacacactcatatatgaGGATATTTACACACAGTCGCGCGCGTTTAGCAGGATATTTAAACTCACGCGCGCGACACACGCCTGCGGGAAACGCGCATTTCAGCATATGTTTGCAGACCAGACGGAGAAACCGCCCGTGCGCTCCTCCACCTCACAGAGAGACACAGGCAAACCGCAGGAAAAGTCAACTTTAAAGCAAACTCTCAGCTTTCATCCACACCGGGGTCCGCTTTGATCTGCGTCGCCGCGGCTCCGGGAGCGGGAACCGcaggaggaggatgatgatgatgaaaaccGGGGATGAAGAGGTTCTGATCCCGGACGACCGAGCATTCAGCCGGTTCAAACACGAGTGTGAGGCGGAGGCGGGCTGGACTGTCACACACAACAAGAGCAACATCTGCGTGTGGATCCAGCTGCTGGAGGAGGACAAGAGTTTACACAAGATCAAGTGTCGGATGACATGTAAGGACATTCCAGCAGAGACTATGTATGATGTGCTCCACGACATCGAATATCGGCGGAAATGGGACGCGAATGTCATCGAAACGTTTGACATCGGCAAACTGACGGTCAATGCAGATGTTGGATATTACTCGTGGAAGTGTCCAAAGCCGCTGAAGAACCGTGATGTCATCACCCTGCGCTCGTGGCTGCCAATGGGGAACGATTACATCATCATGAACTACTCCGTCAAGCACTCAaaatATCCTCCTAAGAAGGATCTGGTTCGAGCCGTTTCCATCCAGACCGGATACCTGATCCAGCGCACCGGCCCCTCCAGCTGCACACTCACATACCTGGCACAGGTGGACCcaaaagGTTCTCTTCCTAAGTGGGTCGTTAACAAGTCTTCCCAGTTACTGGCTCCCAAAGCGATGAAGCGCATCAGTAAAGCGTGTGCGCGGTATCCCGAGTGGAAGCAGAAGCACAGTCCGGGCTTTAAGCCGTGGTTGTTCCCGGAGCAGAACCCGCTGTCCAGCATCCCCATGTCTGAACTCTCCATCCAGCACGCAGAGTCACTGGAGAACATCGACGAGAGCGCGCTGAGCGAGAGCAGAGACGAGCGCGCTGAACACAGTGACGAGGACAACGCtaacaactgacacacacacacacacacacacacacacacacacacacatacaaacaaatagacaaactcataacccccccacccaaccacacaagcacacacacacacaaacacacatacatatagacaaacacataaacccacacacacttataacaatgccaactgacacactgaacatgcacacacacactctctctctttttctctctcactcacacacacagacacttacacagactcaaacacacacatacactcacacctGCATGTGGTttgactccacacacacacacacacactcggggcGCTGCTGCATGGCTGGAGTTCagagaatgatgatgatgatgaatgtaGAGATGAAGAATTAAACCAATTACTGCCTGTGTTTTTGG

Function

symbol description
stard10 Predicted to enable lipid binding activity. Orthologous to human STARD10 (StAR related lipid transfer domain containing 10).

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-1797 Predicted to enable lipid binding activity. Orthologous to human STARD10 (StAR related lipid transfer domain containing 10).

Ensembl:

ensembl_id ENSDARG00000097718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017517 False 500 mRNA 0.55 1 47746176 47746675
TCONS_00017518 True 1539 mRNA 0.52 6 47746176 47774711

Neighbor

gene id symbol gene type direction distance location
XLOC_008848 CU655829.1 coding upstream 20841 47721873 ~ 47725335 (+)
XLOC_008847 paf1 coding upstream 122724 47618221 ~ 47623452 (+)
XLOC_008846 CABZ01087560.1 coding upstream 131446 47609322 ~ 47614730 (+)
XLOC_008845 CABZ01087566.1 coding upstream 162380 47582207 ~ 47583796 (+)
XLOC_008843 sik3 coding upstream 170771 47492838 ~ 47575405 (+)
XLOC_008851 CU633855.1 coding downstream 54008 47828719 ~ 47831416 (+)
XLOC_008852 CU682604.1 coding downstream 64125 47838836 ~ 47875713 (+)
XLOC_008853 NA coding downstream 76168 47850879 ~ 47852351 (+)
XLOC_008854 NA coding downstream 82903 47857614 ~ 47858171 (+)
XLOC_008855 NA coding downstream 107259 47881970 ~ 47883643 (+)
XLOC_008463 BX663520.1 misc upstream 26493894 21252191 ~ 21252282 (+)
XLOC_008837 CABZ01088337.1 non-coding upstream 423200 47322860 ~ 47322976 (+)
XLOC_008836 NA non-coding upstream 448631 47296044 ~ 47297545 (+)
XLOC_008831 CR381579.4 non-coding upstream 939896 46801341 ~ 46806280 (+)
XLOC_008856 NA non-coding downstream 122541 47897252 ~ 47900007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000218_00048845_00054766 NA coding CI01000218 null 48382 ~ 54766 (-)
bowfin (Amia calva) AMCG00016427 stard10,LOC108278271,LOC106581404 coding CM030122.1 CM030122.1 19737294 ~ 19757848 (-)