CI01000030_08906500_08914084


Basic Information

Item Value
gene id CI01000030_08906500_08914084
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8906500 ~ 8914084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08906500_08914084.mRNA
TGATGAAATTGAGGCCGTGTTGGTGGTAGAGGGGGATGCTGTTACTCTACACACTGATATTTCTGAAATACAGAATGATGATACGATACTATGGATGTTTGGACCCAAAGACTCTCTCATATCTCAAATACGGAGAAAGGACGACCTGACTACATTTTTTGTCACTGAAGATGTTGGATTCAGAGGTAGATTGCAGGTGAACCAAGAGACTGGATCTCTCACCATCAGAAACACCAGAATCAGACACTCTGGACAATATAAAGTCACCATCTCTAGAAAGAAGATTTCATCCAAGATATTTAATGTTACTGTCTTTGGTGTGGTTAGTGAGACAGATGGAGTGAAGTCAGTGTCATTATCAGTGATTGAGGGAGATCCTGTCACTCTACATGCTGATTCTGAAGTACACCAAGATGCTCTGATGCTGTGGAGGTTTGGAGATAAAGGCATCCTCCTTGCTAAAATCGATATTGAGACCAACGAAACCTCGTTAAATGCTGATGAGAGATTCAGAGACCGACTGAAGCTGGATCAGACTGGATTTCTGACTATCAAGAACACCAAAACCACAGACTCTGGACTCTATGAGCTACAGATTAGAGGCAGTGAGAGCTTATGGCGATTCCTGGTTTCTGTCCGTGCTGTCCCAGATCCAGGTCTTTCTTCAGGTGTTATAGCAGGGATAGTTGCTGGTGTTTTGATTTCTGTTCTGGCTGCAGCTGTTGCTTTGATTTACTATAACCACAGGATCTCTAAATTAAAAAGGCAAATGGGCAAAGAGAAGGAAGAGACAGTGACAGAGGGAGAATCTGTCACTCTACAGACTGATACTACTGAAATACAGGAAAGTATTACGATAAAGTGGTGCTATGAAACTGAAGACAATCTCATTGCTGAAATTAAAAGAGGGACCAGAAACACATGGGAGGGTGCTGATGGGAGATTCTGGAGCAAACTGAGTCTGAATGAAAGAACTGGAGATCTCACTATTAGTAACGTCAGAACCATTCACTCTGGACTCTATAAACTCAAGATCAGCAGCAGCAGCAGAAGAACCAAATACAAGAGATTCATTCTTACCGTCAATGTGAGGACAGTGTCAGTGGAGGAGGGAGGTTCTGTCACTCTCCAGACTAATGCTAAAATACAGAGAGATTATCTGATTCTGTGGACATTTGGAGCTGAAAACCTTTTCATTGTTAAAAAAGATTCAGAAACGACTCGTATTAGTGAGAGATTCAGAGGCAGACTTAGACTGGGCAAGAGGACAGGATCTTTGACCATCACAAACATCACAAAAACAGACTCTGGACATTTTAAACTACAGATCATCAACGGTGAAAAGACCACATTCAGGAGATTCAATGTGACTGTCACCGTGAGGTATGAGCCAGTGATGGAGGGAGGATCTGTCACTCTACACACTGATGATGAAATAAAGAGAGATGATGTGATACTGTGGATGTTTGGAGAAGAAAACTCTCTCATAGCTGAATTCAAAGGAGAGACCGGAGAGACCACTATATATGATGATGTTGCTGATGGGAGATTCAGAGGCAGACTGCAGCTGGACAAGAACACTGGATCACTGACCATCACAAACACCACAACTGAACATGCTGGACATTATAAACTGAAGATCTGCAGCAGTAAAGGAAACACCATCAGGACATTCATTGTTATTGTCAGAG

Function

NR:

description
Si:dkey-182g1.3 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08906500_08914084.mRNA True 1691 mRNA 0.42 6 8906500 8914084

Neighbor

gene id symbol gene type direction distance location
CI01000030_08889890_08899808 NA coding upstream 5820 8889890 ~ 8900680 (+)
CI01000030_08875265_08877569 NA coding upstream 28931 8875265 ~ 8877569 (+)
CI01000030_08862264_08875155 NA coding upstream 31345 8862264 ~ 8875155 (+)
CI01000030_08845484_08861801 NA coding upstream 44699 8845484 ~ 8861801 (+)
CI01000030_08837486_08838040 NA coding upstream 68049 8837221 ~ 8838451 (+)
CI01000030_08951137_08953545 NA coding downstream 35894 8949978 ~ 8953663 (+)
CI01000030_08970358_08975052 NA coding downstream 55308 8969392 ~ 8975093 (+)
CI01000030_09065536_09066102 NA coding downstream 151054 9065138 ~ 9066149 (+)
CI01000030_09086896_09146359 ASIC1, ASIC1B coding downstream 172812 9086896 ~ 9146359 (+)
CI01000030_09158208_09166948 SMARCD1.L, SMARCD1 coding downstream 244124 9158208 ~ 9168173 (+)
G162236 NA non-coding upstream 95045 8809324 ~ 8811455 (+)
G162233 NA non-coding upstream 99323 8806668 ~ 8807177 (+)
G162232 NA non-coding upstream 100542 8805494 ~ 8805958 (+)
G162192 NA non-coding upstream 102708 8801247 ~ 8803792 (+)
G162230 NA non-coding upstream 105935 8800276 ~ 8800565 (+)
G162254 NA non-coding downstream 32038 8946122 ~ 8946337 (+)
G162255 NA non-coding downstream 32474 8946558 ~ 8947698 (+)
G162256 NA non-coding downstream 33774 8947858 ~ 8948340 (+)
G162257 NA non-coding downstream 35380 8949464 ~ 8949693 (+)
G162202 NA non-coding downstream 117793 9031877 ~ 9039588 (+)
G162137 NA other upstream 334774 8568010 ~ 8571726 (+)
G161986 NA other upstream 358175 8544582 ~ 8548325 (+)
G162088 NA other upstream 666896 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1033728 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1704015 7200104 ~ 7202485 (+)
G162449 NA other downstream 442319 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1128709 10039358 ~ 10047210 (+)
G162297 NA other downstream 1219215 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1577362 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1824497 10738087 ~ 10751548 (+)

Expression


Co-expression Network