XLOC_000885 (MFAP4)


Basic Information

Item Value
gene id XLOC_000885
gene name MFAP4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59067978 ~ 59072128 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001384
GATCCACGACTGCAGAAAACACACGGAGCTGTTATCTTCTGTGATCTGAGGAGGAGAGATGGAGAAGACGGCAatcATCTTGTCAGCTTTTCTCCCAGTTATATTGTGCTGTGATTGCAGTCATAGTGTAGACAAACCGTTCGACTGTTCTGACATCTACAAATCAGGACAAAATCTGAGTGGGATTTACTCCATCTATCCAGCCGGAGACTTTCCAGTCTGGGTTTACTGTCAGATGGTCTCAGAAGGGAAAGATGAAGACAAAGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAAAGTGGAGGGAGAATACTGGCTGGggtTGGAGAACCTCTACCAGCTGACACGGCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTTTCTGGATTCACTGATGGAGGAGCAGGTGATTGTTTATCTGGCCATAATGACCTGAAATTCTCCACCTTTGACAAAGACCAGGACACTCATGAAAAGAGCTGCGCCAAAGAGTATCTCGGGGGATTTTGGTATGGATCCTGTCATAATACAAACCCCAACGGTGTGTATTTATGGGGAGAAGATCCCACTCATTACGCCATTGGTGTCTGCTGGTCAACCTGGAAGAATTATGCAGTCAGTATGAAAACCTTCAGCATGAAGATCAAACGCGTGTCTTAGAAAAATACTGTGCATCTAAAGGAGAACGTCAGACTTTTCACCTCGGTTTGGAATATTTTAAGTTatgtgtgatgatgatgatgatgatgatgatgctgcaGTTGGTGTCCTGCATCAGAACTTTTCTTTGATTACAGTGTTTCCTCACACAGTGAATGCAGACACTGAGATTTACAGGATTCTGTCCTGACGTCTGAAAAAATGTTCAGCTTCAGTTCAGTCATGTTGTGCCTACAATGAAAACACAATACTGTATCTATGCTACAAACGCAGATATTTGAAGACTGTAAGCTGGTGAAGTGTGCTGTGGTTTCCACAAGGAGGCGCCATACACACGGTGTCCTGgtgttaaatgtgtgttctgTAGACAGCGGAGAAGCCAAAGCTGAGAGACAGTTTGCTACTTGGGACTTTTCTAGAGCCTTTGTGTGGGATGCTTTTGAGCCTCCCTGTCATTTGTCATCGCTTACATAAActattcataataaataaataaatggatttttCATAATGTACTATAAAGACAAGTCGAGCTCTCTTGTCATTCActatgtgtggacatacagtgcAATGAAATACATGTCTCGCAGGACCATGGTGTGACATAAttaaacataatcataaatatatGCACGTATCATGTCTGAGACCCCCAACAAACTGCTTGTGAAAG
>TCONS_00001385
GGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAAAGTGGAGGGAGAATACTGGCTGGggtTGGAGAACCTCTACCAGCTGACACGGCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTGATTGTTTATCTGGCCATAATGACCTGAAATTCTCCACCTTTGACAAAGACCAGGACACTCATGAAAAGAGCTGCGCCAAAGAGTATCTCGGGGGATTTTGGTATGGATCCTGTCATAATACAAACCCCAACGGTGTGTATTTATGGGGAGAAGATCCCACTCATTACGCCATTGGTGTCTGCTGGTCAACCTGGAAGAATTATGCAGTCAGTATGAAAACCTTCAGCATGAAGATCAAACGCGTGTCTTAGAAAAATACTGTGCATCTAAAGGAGAACGTCAGACTTTTCACCTCGGTTTGGAATATTTTAAGTTatgtgtgatgatgatgatgatgatgatgatgctgcaGTTGGTGTCCTGCATCAGAACTTTTCTTTGATTACAGTGTTTCC

Function

symbol description
mfap4 Predicted to enable antigen binding activity; carbohydrate derivative binding activity; and signaling receptor binding activity. Involved in elastic fiber assembly; regulation of collagen metabolic process; and response to UV. Located in several cellular components, including collagen-containing extracellular matrix; elastic fiber; and microfibril.

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0001867 complement activation, lectin pathway biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2246 Predicted to enable antigen binding activity; carbohydrate derivative binding activity; and signaling receptor binding activity. Predicted to be involved in complement activation, lectin pathway and elastic fiber assembly. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in hematopoietic system; macrophage; and nervous system. Orthologous to human MFAP4 (microfibril associated protein 4).

Ensembl:

ensembl_id ENSDARG00000090557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001384 False 1469 mRNA 0.44 6 59067978 59072128
TCONS_00001385 True 636 mRNA 0.45 3 59070762 59071599

Neighbor

gene id symbol gene type direction distance location
XLOC_000884 pin1 coding upstream 2027 59062603 ~ 59065951 (+)
XLOC_000883 cdc37 coding upstream 53925 59007536 ~ 59014053 (+)
XLOC_000882 CABZ01083166.1 coding upstream 67739 58990121 ~ 59000239 (+)
XLOC_000881 thumpd1 coding upstream 82093 58981985 ~ 58985885 (+)
XLOC_000880 eri2 coding upstream 88527 58977262 ~ 58979451 (+)
XLOC_000886 MFAP4 coding downstream 1075 59073203 ~ 59089598 (+)
XLOC_000887 mfap4 coding downstream 18455 59090583 ~ 59092056 (+)
XLOC_000888 FP015850.1 coding downstream 59164 59131292 ~ 59131406 (+)
XLOC_000889 NA coding downstream 65755 59137883 ~ 59138594 (+)
XLOC_000890 gpr108 coding downstream 70655 59142783 ~ 59146016 (+)
XLOC_000879 NA non-coding upstream 91291 58975017 ~ 58976687 (+)
XLOC_000878 NA non-coding upstream 108521 58956066 ~ 58959457 (+)
XLOC_000876 NA non-coding upstream 213601 58853170 ~ 58854377 (+)
XLOC_000874 NA non-coding upstream 285686 58778053 ~ 58782292 (+)
XLOC_000871 NA non-coding upstream 398903 58646685 ~ 58669075 (+)
XLOC_000893 NA non-coding downstream 89837 59161965 ~ 59162831 (+)
XLOC_000894 NA non-coding downstream 176002 59248130 ~ 59251679 (+)
XLOC_000896 NA non-coding downstream 240402 59312530 ~ 59313528 (+)

Expression


Co-expression Network