CI01000030_09259092_09261043


Basic Information

Item Value
gene id CI01000030_09259092_09261043
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9258216 ~ 9261043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_09259092_09261043.mRNA
GTATAAAAAGGCATCATAATGGGTTGTGCAGTCATTGTAATGCAGAACGGACAGTTGAACATGTCATATTATATTGTATGAAAATGAAAGACGAGTGTTGCTCATACAATTGCAGGAAGAAAATCCAAGGCATATCATTTAAAAATCTGTTATAAATACAGGATCAAGTGTTGCAATATATAAAGCAACAAGATTATATTTGAGAATATAATTAAGTAATTAACTTATTATTATTAGTTTATTATTATAATTATTTTGGCTATTATTATTATTTTCTAATTTAGTAAGAGCAGTTGCATTGCTGTTCCACACTCCAGTTCAGTTGGTGGCGGTAATGCACCTAAAAGCTGGTTTGCCAACCGCCAATAAACAAGAAGAAAAAGTCAAGACTCTGTTTTCCGGAAGTGAGGCAATATTTCACGATAAAATAACAGTAAATTAATTTGCTACTTATTAGATTGTGTTTTATTAACGACTACACTTAACCCAACCCTAAACCAATAATGCAAATACAGTAATTAAATGTCCTAATATTAATTTGCGCATGCCCGGTGCGGTATCCCTTCTAGTCTATCCGTTTCCGTTTCCTCCTTCGACTGCTCCCCGTGTTACTTGTTGATGTCACAACTTGCGTCTTTTAGACAAGGCAAAGCGAGAATAACGCAGTCCGTTTTTTTCTGTTTGTTTTTCACACGTTTTGCAGTTTCGGTGCCGATCATCACATTACTAGCAAAAACGACACAACCGTTGTTAATGTTTTTGACGCGGCTTCTTCAAATCAGTATTACAGGTTTACTTTCGATTTCATTAAAAAAAAAAATGGTATCAAAGTAAACATTCGACAGAATCTGGACTTCTGGAGAAGTGGTGAAAATAATGCTAGACATTATTCTCCCACTGTGTGTTTTGCTCCTGCATAGTGTTTCTGGAGCTGATACAGACAGAGTGTCAGTGACTGTGAATGAGGGAGATCCAGTCACTCTAAACACTGGTGTTAAAATAAACCACAGAGACAGAATTAAATGGTTTTTTAATGACTATCGTATAGCTCAAATCATTGGAAATATTAGTATCTGCACAGACATTCAGTGTAAAGATGGTGATGAGAGATTCAGAGACAGACTGAAGCTGGATCATCAGACTGGATCTCTGACCATCACAAACACCAGAAACATAGACTCTGGAGTTTATCAACTACAGATCACCAGCAATACTGACAGCCTTAAGATCTTCAATGTTACTGTCGGAGCTGTAGTGTCAGTGATGGAGGGAGATTCAGTCACTCTACACACTGATATTACAACAAACCAACAAGACAGAATTAAATGGTTTTTTAATGACACTCGCATCGCTCAAATCAATGGAGATCGCAGTAAGATCTGTACAGATGTTCAGTGTAATGAAGGTACTGAGAGATTCAGAGACGGACTGGAGCTGGAGAATCAGACTGGATCTCTGACCATCATGGACATCTCAAACACACACTCTGGACTTTATCATCTAGAGATCACCAACCGCAACAGTGAAAAGATCTTCAATGTATCTGTTCATG

Function

NR:

description
hypothetical protein cypCar_00048661, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_09259092_09261043.mRNA True 1552 mRNA 0.37 3 9258216 9261043

Neighbor

gene id symbol gene type direction distance location
CI01000030_09241979_09249271 NA coding upstream 8931 9241637 ~ 9249285 (+)
CI01000030_09214411_09224921 NA coding upstream 33275 9214280 ~ 9224941 (+)
CI01000030_09181881_09195357 NA coding upstream 62183 9181881 ~ 9196033 (+)
CI01000030_09169745_09175576 GPD1A, GPD1, GPD1B coding upstream 81985 9169649 ~ 9176231 (+)
CI01000030_09158208_09166948 SMARCD1.L, SMARCD1 coding upstream 90043 9158208 ~ 9168173 (+)
CI01000030_09300172_09306760 NA coding downstream 38762 9299805 ~ 9307374 (+)
CI01000030_09308467_09315467 NA coding downstream 46769 9307812 ~ 9316060 (+)
CI01000030_09321409_09339033 NA coding downstream 60297 9321340 ~ 9339964 (+)
CI01000030_09361364_09379014 NA coding downstream 99992 9361035 ~ 9379721 (+)
CI01000030_09509234_09514703 NA coding downstream 247546 9508589 ~ 9516002 (+)
G162389 NA non-coding upstream 15477 9200234 ~ 9242739 (+)
G162432 NA non-coding upstream 21653 9235564 ~ 9236563 (+)
G162190 NA non-coding upstream 107832 9149706 ~ 9150384 (+)
G162202 NA non-coding upstream 218628 9031877 ~ 9039588 (+)
G162257 NA non-coding upstream 308523 8949464 ~ 8949693 (+)
G162438 NA non-coding downstream 20485 9281528 ~ 9281835 (+)
G162439 NA non-coding downstream 21815 9282858 ~ 9283089 (+)
G162441 NA non-coding downstream 23341 9284384 ~ 9284611 (+)
G162318 NA non-coding downstream 70403 9331446 ~ 9333904 (+)
G162137 NA other upstream 686490 8568010 ~ 8571726 (+)
G161986 NA other upstream 709891 8544582 ~ 8548325 (+)
G162088 NA other upstream 1018612 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1385444 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 2055731 7200104 ~ 7202485 (+)
G162449 NA other downstream 95360 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 781750 10039358 ~ 10047210 (+)
G162297 NA other downstream 872256 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1230403 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1477538 10738087 ~ 10751548 (+)

Expression


Co-expression Network