CI01000030_09300172_09306760


Basic Information

Item Value
gene id CI01000030_09300172_09306760
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9299805 ~ 9307374 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_09300172_09306760.mRNA
GTATAAATATGCATGAAAATTAACTCTAAAATACATTTTTATTATTAAGCAAAGTGTCCTGAACACTAATCTAACTGTAAATTTAAAATATATAATTTAAAACATTAATAAAAACTGCTGAGAACACTAAAACATAGCATTTGTTACATGTCCCCGCTATCTAAACCTAAGACTCCACCATATGCTTAAAAAAAAGTAATAAGAAATTCATATGTTATATACCAGGGGTGGCTAACATCAATTAGGAACATGCCACAAGACACATTTTCAACAGGAAATTGCATCATCTTGATCTTATGCAGGCCATGAGAAGACCAAAAGTAAGTCCTCTCATTTTAATCTCTGTATATTTGATGAAATTGTAACTATGACTGAGAAGGTCAATCAATGTACTGTCCTGTTACCTAAATTGTTTCTTAGATGTTATTTGTTTATTTTAAAAACATTAATTTTAGAAGATGGAGAGAACCCATACTATGCAGAAACACCCACCCAAGGTGTGTCTGGTGTTGATATAAAGATAGTGTCAGTGGGAGATTCAGTCACTCTAAACACTAGTGTTGAAACAAACCAACAAGAAGATATTATATGGTATTTTAATAACATTCGCATCGCTCAAATCACTGAAAATCAGAGTAAGATCTGTACAGATGATCAGTGTGATGAGAGATTCAGAGACAGACTGAAGCTGGACAATCAGACTGGATCTCTGACCATCACAAACACCAGAAACACAGACTCTGGAGAATATAAACTAGTACTGATCAGCAACAGCAATAATCCAGAGATCTTCAATGTTACTGTCAGTGGTGTTCCAGATTCAGGTCTGTCTTCAGGTGCTGTTGCAGTAATAGTTGTTGCTGTACAGGCGTTTGCTGCTGCTGCTGTAACTGTTGGTGTGATTTACTGTCGCAAGCGTCAAGCAGGACAAAAAGACGGTGAGATGCAGGCCGAGCCAGATCAGGAGAATCATGTAGATGACTCGACCCCTGATCAGACTGTCCCTCTAATGAATGCTGCCAATGAGACGTCTCCTCATCAGACTGACACTCCAAAGAAGGATACTAGCAACGGGACCTCTCCTAATCAGAATAAGATTCCTTTGATGGACACTGATAACGAGACATCCTCTAATCCATCTGAAGCTGCTGAAGAGGCATCACTATAACATCATGTTTTGACATAAGAGATATTTTGTCCATTCTGTGTACATTCTCTTATTACTGCCTTACGAAGACGGGTACTGTGACCAAATTGACCGCTGCACACAGACTTGTACTGCAAGACGGCTCTCTTCACACAGCACAGATTGACAGCTGCCTTGACATGTTCGTTGTGCACCAGTTGGATTTTATTGATTTATTTGTTGTTGAGTATTTATCACATTCCGTGCCTGATACTGGATGCATAAATGACTATATTAGTGAACTAATGTAGGGAATAGAGAATGAGGGTATAGGATGTGATTTAGGACACAGCCTCTGAGGGTTGACTTTGAGTGATGTTAATTCATGGACCACGGTAGCCATAAATGACAAATATTACCCTGAATTCACTGTTTTCTACAGCATATTACTGTTTAATGGAAAGTGGATAATAATGGACAAATGATAGTGGAGCTAATGGAGGAAGAAAGCTTACTGTGTTTAGTGTGTTCTTTTCCGAATATAATTCCAGAACAAAAATATTTTGTGGAAGTGATTCCCCTTTAATTACTTATATCAGGCCCAGCTCATTAGTGTCACTGCCAGTGAATGAGACACAGGTGCAGAGTTAAATCAA

Function

NR:

description
hypothetical protein cypCar_00045274

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_09300172_09306760.mRNA True 1782 mRNA 0.38 6 9299805 9307374

Neighbor

gene id symbol gene type direction distance location
CI01000030_09259092_09261043 NA coding upstream 38762 9258216 ~ 9261043 (+)
CI01000030_09241979_09249271 NA coding upstream 50520 9241637 ~ 9249285 (+)
CI01000030_09214411_09224921 NA coding upstream 74864 9214280 ~ 9224941 (+)
CI01000030_09181881_09195357 NA coding upstream 103772 9181881 ~ 9196033 (+)
CI01000030_09169745_09175576 GPD1A, GPD1, GPD1B coding upstream 123574 9169649 ~ 9176231 (+)
CI01000030_09308467_09315467 NA coding downstream 438 9307812 ~ 9316060 (+)
CI01000030_09321409_09339033 NA coding downstream 13966 9321340 ~ 9339964 (+)
CI01000030_09361364_09379014 NA coding downstream 53661 9361035 ~ 9379721 (+)
CI01000030_09509234_09514703 NA coding downstream 201215 9508589 ~ 9516002 (+)
CI01000030_09526436_09552770 NA coding downstream 218881 9526255 ~ 9554552 (+)
G162441 NA non-coding upstream 15194 9284384 ~ 9284611 (+)
G162439 NA non-coding upstream 16716 9282858 ~ 9283089 (+)
G162438 NA non-coding upstream 17970 9281528 ~ 9281835 (+)
G162389 NA non-coding upstream 57066 9200234 ~ 9242739 (+)
G162432 NA non-coding upstream 63242 9235564 ~ 9236563 (+)
G162318 NA non-coding downstream 24072 9331446 ~ 9333904 (+)
G162449 NA non-coding downstream 49384 9356403 ~ 9357014 (+)
G162452 NA non-coding downstream 74904 9382278 ~ 9382506 (+)
G162454 NA non-coding downstream 81766 9389140 ~ 9389367 (+)
G162137 NA other upstream 728079 8568010 ~ 8571726 (+)
G161986 NA other upstream 751480 8544582 ~ 8548325 (+)
G162088 NA other upstream 1060201 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1427033 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 2097320 7200104 ~ 7202485 (+)
CI01000030_10039688_10047019 NA other downstream 735419 10039358 ~ 10047210 (+)
G162297 NA other downstream 825925 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1184072 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1431207 10738087 ~ 10751548 (+)

Expression


Co-expression Network