CI01000030_09847512_09854804



Basic Information


Item Value
gene id CI01000030_09847512_09854804
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9847422 ~ 9855676 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000030_09847512_09854804.mRNA
CTTTAAATTCCGTCGCCATTAAAGCAGAAGAACAGAACTTTTTTATGGATCAGGATTTGCTCTCATTTTCCTGAGTGGAAAGTGGTGAAAATGAAGCTTTTCATTCATTTATTCTCAGTGATCATTTTGCTCGAACATGGAGCGTCTGGTGCTTATAAAGTGTCAGTGATGGAGGGAGATTCCGTCACTCTACACACTGGTGTTGAAATAAAACAACAAGAAGAGATTAAATGGTATTTTAATGACACTCGCATCGCTCAAATCAGTGGAGATCTCAGTACGATCTGTACAGATGTTCAGTGTGAAGATGTTAATGAGAGATTCAGAGACAGACTGAAGCTGGATCATCAGACTGGATCTCTGACCATCACAAACACCAGAAACACAGACTCTGGAGAATATAAACTACTGATCTTCAGCAGCAGCGACAGTGAAACGATCTTCAATGTTATTGTCCGTGGTGTTTCTGCTGCTGAACTAGATGAAGTGAAGAGAAAGGAGGGAGAATCTGTCACTTTGGATAGTGGTGTAACAAAAAACCCAAATGATGTGATGATGTGGTATTTTAATGACACTCTGATTGCTGAAATCACTGGAGATCAGAGTAAGATCTGTACAGATGATCAGTGTGATGAGAGATTCAGAGACAGACTGAAGCTGGATCATCTGACTGGATCTCTGACCATCACAAACACCAGAACCGCAGATGAAGGACTTTATAAACTACAGATGATCATCAACAACAGCAGCTTCAGCATCACTACAGTGAAGAGATTCAATGTTACTGTCACTGCTGATCCAGATTCAGGTCTGTCTTCAGGTGTTATAGCAGGAATAGTTGTTGGTGTTCTGCTGGTTGCAGCTGTAACTGCTGGTGTGATTTACTGTTGCCGCAGCAAGAACAATACACCAGCAGCACAGAATGAGAATGATGTTGATGGTTCTGGCAGGGAGCAGATTCCGTTGAACGGGCAGGGGGAGGAAATATTATCTCTGTTTGATGGAGACGATTGCCTTCACTTAAATACTCTGTTTGGCCTTCTATCTGTCTCTGAATCTCTTATCAGGAACATCCCTGTATGTGGAAAAGTTCCAAATCCCCACATGATGAAGTTGTTTGAGCTGCTGTTCTTCACAAACACACCAGATGGAGCCATTTATAAGTTCAATCAATATCAACTGATGATCATTGTAGAAAGAAATAGAGAAGAGGTTCAACATCTAGTCGAGTGGTGTTCGGATAGTGACCTGGTTTTGAACACCACAAAAACAAAGAAAATCGACTACAGGAAAACCAGGAAAACGACACCTTCCCCTCTCTATGGAGAGGAAGTTGGAAAAGTTACCAACATCAAATTTCTGGGCCTGTTTATCACAAATGATCTAACATAGACTGTTAACACCCGGTGTTACGCCCTTATGTAGTGGCATTCACAGACCGGGGGGTGGTTTAGTTGTGGCATAGGGTGTTTTTTTGTTTTTTTCTCTCCCCTGTTTTTTTCCCCTTTCTGTCGCTCTCTTTCACTTGTGCAGATGCAAGCTGATTGGTTGTCTTGGCTGCCAATCATCCGGGACAAAACGGATTGAATGTGATGACGTCAGGATGTGCTCCAATCGGTACGCTGTGCGACAGGGGAGGGAGGCTATATAAGGGAAACGCCAGTGCACAGACTTGAACTCTTTGTTCTTTGCATTTTTTTTTTTTTTTTTACCTTTTGGTTGTTTTTTCCTTCTAGAGTTAATTTTGTTAGTGTGCTTTGTTTACCATGTGAACGTTTATTTTCTGAATTCCCCTATGTTTCCCCATTTGTGAACGTTTGAAAGCTTTACAAGGTTCTTTACAAAAAAACGTGTTGAACTGAATGGAGGAGAAGGGTTAGGTAAGCATGTCACGTGACATACATGGTGCACACACTCAGTTTGATTTTTGTTTAGACACATTAGGTTAGGGATCTGTGCCACCCGTTGTATTTTTGGGTTTGCTAGTTTGAAAAGATACGACGTCTCGGGCGTTGAAGATTTTTCTTTCTTTATTTCTTTTGTATTAGTTAGGTTTAGTTTATAAATGGATTAGAAAGATTACTTTTTGTTTTATTGCTTTCTTTCATTTGGCACGGTCTAGTTTCCCTTTGTTTCTCCTCAGTTCTTAAATATTGTAAGTTAGCTGGTGTTTTGTTTTGCTCTGTAGAAATTGTTTACCTCCTTTTTATTTTTCTCTTTCTCTGTAAATAATTTCAACTTTAATACTTTATGTATAATTTATA
>TU184392
AGCTGTAACTGCTGGTGTGATTTACTGTTGCCGCAGCAAGAACAATACACCAGCAGCACAGAATGAGAATGATGTTGATGGTTCTGGCAGGGAGCAGATTCCGTTGAACGGGCAGGGGGAGGAGTAGGTGAGGATTTGACTAAGAAATGATTAAGAAACAATACTGAGTCTATAAAACATGTCAAAACTCTGTGAAACACAACAAGCATATAGGCAAGAATGCTCATTTAAACTCCTTTAAACAAATGTAAAGTATAAAAAGATTTTTTTAAGTATGCCTGTAGTTTAAAGTTACATGTCTCCTAGCTACAAGCTACAAATCATTGCATAAATGCTGATAAGCAAAGTGCTCCCTTTATAATCTCTAAAAAGTTGACATCTCATTTCATTGTGATCTCAAAAAGCTCCACTGACTGCACTACGAATCTTTAATAACATCTACACTTTGTTATAATCAGAGGATTTGCCAGCATGATAATTATTCAGCACTGAACAAAAACTCTGGCGTTTTGAGCGGTGAGTAGGTTCTAACCTAAACACATCTGATTGGCCAAAAAATCAACAGATATGTCTGTTATTGGCTACATTGCTCAACGCCGCAAAAACGTGTTATACACAGAAACTCTGCCTATGCTCGTGCCCCGAGAATCATTTTAGGCCCTGTCCCAAATGGCATCCTAAACTCTTGCGGTCTTCCTCGCACTTTCGTGACGATACGCTGCTTTGACTGTCGGGAAGAAGTCTGCTGCGAAGCTAGTGCCAGTGTGGGCTCAGGATAATTATACAAAGGGACACTCACGAGTACCCTTTTGAAACCTGAAACGACAAATGAGACACCCTACAGTCTTGTGGACTTAAATGACACATGCATGCAGCAGCCATTGTAAATCCACCAGACTGTAAATGCATATGAAGTGTGCTGTTTGGGACAGGGCCTTATTCTCCCACAACCCACACATTCGAGTGTCTTACCGCCCCACACCTGCACTCGCCCGTTAAATCTTGTCCCGCGCTGCACTCTATTGCGTCGGGTCCCCCAGAAGTGCAGGTCTCTACCTTTCAGAACACCAAAAGTGGACTTGTGCTCACGAGTAGAGCAGACAAATTCTTTCTATGCAGACTACAAAGGTCACAAAATGAAATCATGTTCTGAGTGTTTACAAAAAATCAACACATAACACTTTCTATAGCCCACTTAAAGTGTTTATTACAAATAAATTACTAAATGATAAAAATAAATGATAAAATGTAAATGACACTGAAGGGACACTGAAGAGAATTAGGAAATGTTGGAGAGAAGAGGTCACTCACAGAGTAAAGTGTCACGAAATATAGCAACACATTACCAGCGGCGAAAGCAAATGCTTGATGTTTTTCAGTCTATAGAAGTTTATTATAGGTACTGAAGTGATCCAGACAGAAACAGTGTCAAATCAGTGCACTATAATCTGCTTTGACATTTCAGTCTGTTTACATCCTCGTATAACTGATACCTCACCAAGACGGGCATTATGACCCAGACTTTACTCCTCAACACAGTTTTATATTGAAGGACAGTCTGCACTTCTCATACTGTGATCATACTGTGCCACTACTCATACTAAAGTTTGTTTTAACCACCAACACTAGTCATCCAACTTCATCAGAAAACACTCTCCAAACAAAACCTGCCTTGACAAGTTTGATGAGAGTATTCTGTTACATACGTGATACGCGCTGTGTTAAATGTTGTTACTCTGCTGTTAAAACTGAAAAACACTTGATGGAGGAATGTTCCAGCAAATTAAACACACAAATGGGTTTATACTTGATAAAACAATGCAATTAATTTATAGTGGTTCTTAATATGTTTGTTAGATATATTTTTATCTGCTGCTGAAATGTGCAAAAATAAAATTGCAACATTTAGTCTTTTTACCAGAAGTTGTGAACAAATCTGTGACATTTTATGAGGTGCTTATTAGTTTTATTTGTTGACATTTGAGGAGATAAAGACCTGTCATGTCATTTGTATTTTTTCCCCATCTTGTGTCTCTTTTAGTGTTCAGCTGTTATCTTTTTTAAACTGTGGCGTTTTTGTATTTTGGTGATTGTGTTTGTCTTGCAGAATATTATCTCTGTTTGATGGAGACGATTGCCTTCACTTAAATACTCTGTTTGGCCTTCTAGTTAGACTTATGGTTTTCCATGTTCATATTTTTGGGTTTATATTTCATCTGGTGCTCATTATAAATATATAAATAGCCTCAATAGAGGTGTATCATGAAGTTTATGTTAGGTAAATGTTTTAAAAGTCAAATGTGTCAAAACTAATATATGCTAAAAGCCTGCACCAACTGTTTCTTTTTACTAATTATTTTATTATTATTATTATTATTATTATTATTATTATTATAAGCTGTTTAAGACAAATATTGTGGGTTTTTTTTTTCTTTTGCCACTCTGGGTAGAATATTTTTAGACATTTGTCTTTCTGTCTTCCTTACCTTTTATATCAGCCAAGTGGAAATGTGCCTTGAAGTAAAACCCACATAATCAGTTTTGTTTTCAGAAATAAGGCAA

Function


NR:

description
hypothetical protein cypCar_00048661, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000030_09847512_09854804.mRNA False 2264 mRNA 0.40 9 9847422 9855676
TU184392 True 2562 lncRNA 0.37 2 9849518 9852577

Neighbor


gene id symbol gene type direction distance location
CI01000030_09799840_09805801 NA coding upstream 41603 9798003 ~ 9805819 (+)
CI01000030_09754796_09761721 NA coding upstream 83680 9754573 ~ 9763742 (+)
CI01000030_09724422_09740444 NA coding upstream 106844 9724355 ~ 9740578 (+)
CI01000030_09691687_09697272 NA coding upstream 149930 9690796 ~ 9697492 (+)
CI01000030_09598376_09634083 NA coding upstream 212942 9598154 ~ 9634480 (+)
CI01000030_09876738_09883981 NA coding downstream 19609 9875285 ~ 9884005 (+)
CI01000030_09922237_09930221 NA coding downstream 66373 9922049 ~ 9930368 (+)
CI01000030_09989586_10008913 NA coding downstream 133691 9989367 ~ 10009155 (+)
CI01000030_10039688_10047019 NA coding downstream 183682 10039358 ~ 10047210 (+)
CI01000030_10099125_10101681 NA coding downstream 243282 10098958 ~ 10102160 (+)
G162399 NA non-coding upstream 9593 9833678 ~ 9837829 (+)
G162539 NA non-coding upstream 25407 9812537 ~ 9822015 (+)
G162359 NA non-coding upstream 130766 9711018 ~ 9716656 (+)
G162530 NA non-coding upstream 163758 9682368 ~ 9683664 (+)
G162550 NA non-coding downstream 3815 9859491 ~ 9863964 (+)
G162563 NA non-coding downstream 86212 9941888 ~ 9965500 (+)
G162572 NA non-coding downstream 119641 9975317 ~ 10038293 (+)
G162574 NA non-coding downstream 127035 9982711 ~ 10019123 (+)
G162449 NA other upstream 490408 9356403 ~ 9357014 (+)
G162137 NA other upstream 1275696 8568010 ~ 8571726 (+)
G161986 NA other upstream 1299097 8544582 ~ 8548325 (+)
G162088 NA other upstream 1607818 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1974650 7868292 ~ 7886228 (+)
G162297 NA other downstream 277623 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 635770 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 882905 10738087 ~ 10751548 (+)
G162821 NA other downstream 1010336 10866012 ~ 10868440 (+)

Expression



Co-expression Network