XLOC_008855


Basic Information

Item Value
gene id XLOC_008855
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47881970 ~ 47883643 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019090
tctttctTCATTAAATCATAGTTTAAGTCTTGTCAATGCTTTTATTGCACTCAGAATTCTTTCTAGATCTCTCATTTCTAGATTTTTATCAGCATTCTGGATTTTCATCATCCAGCTCTGCCGTTTCCTCCGTTGTTTCCTACTAGTTTAATCTTTTACTCTGTAGTTTACACATCTTACTAAGCTTTGAATCTCTGAAGTATTGTCTAGATTTAGGGGCGGcacagtgtctcagtggttagcactgtggcctcacagcaaggtctctggttcgagtcccggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggtgtgggtttcctccgggtgctccggtttcccccacagttcaaacacatgcgctataggggaactgatgaagtACATTggccagtgtatgagtgtgtgtgaatgagtgtgtatgggtgtttcccagtactgggttgcagctagaagggcatccgctgtgtaaaacatatgctcgaatagttggtggttcattctgctgtggcgatccccgATAAACAAGCCAAAGAAAATTTTTCtagatttctaaattcagtttttactcttAATTTCTCTCCAGATTTGTAAATTTTCTTTCATTCAGAATTTAAAGCTACAGTTCCCATTTTATTCCGTAAATGTTgagtggttatttatttaatctcaGAGATTGTCAGCCCATTTTTTTGTTGtggttatttttaattaaaagtttttacATCTCAATTTTacttagttgatcaattcccctatagcgctggaaactggaggaaacccacgcccacacggggagaacatgcaaactccacacagaaacaccaactgacccagcgacagcactgggactcgaaccagagaccttcttgctgtgaagccacagtgcgacaccactgagccaccgtgccacctttaTTAAGTTTTTACATCTTATATATGGTTTTGTTTTACTTGAAATTCTCTCCAGATCTCTCTTCCCtaaattttttttctccttcatcTCAGAACTGCAGTTAAGCAGAGCTCCACCTGTAATACAGAAGTTTTCAGTTTTCATTAGGTTTATTCAGTGCTCGTGAAGCACCAGCACACAACAACAAACCCTCAGTCGCTAAAAACATTCAACGCATCATCAGTCGCCATATATATGTACAATATAGGATCTCCATATATTAACTGTTCAATACATTATAGAGTAGTCTGAACACTATGTACAATAGAAATATACGCTAAAGTCTCGATggtcgaataaataaataaaaaacaggatGGCCGTGGCTTCTGCGCTGTTATTGGCTAAGGAAGGGTGTGGTCCGTCTGCAGCAGGGCATCATGGTCCCGTGTTCAGTGGGTTATACCACGGTCCCGCTGGGAGAATTCCCATTCTGTGCTGATAACGGCTGAGATGCAT

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048588 developmental cell growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0030900 forebrain development biological_process
GO:0060560 developmental growth involved in morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0016049 cell growth biological_process
GO:0048495 Roundabout binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019090 True 1436 lncRNA 0.42 2 47881970 47883643

Neighbor

gene id symbol gene type direction distance location
XLOC_008852 CU682604.1 coding upstream 6257 47838836 ~ 47875713 (+)
XLOC_008854 NA coding upstream 23799 47857614 ~ 47858171 (+)
XLOC_008853 NA coding upstream 29619 47850879 ~ 47852351 (+)
XLOC_008851 CU633855.1 coding upstream 50554 47828719 ~ 47831416 (+)
XLOC_008849 stard10 coding upstream 107259 47746176 ~ 47774711 (+)
XLOC_008856 NA coding downstream 13609 47897252 ~ 47900007 (+)
XLOC_008857 otx5 coding downstream 20221 47903864 ~ 47909281 (+)
XLOC_008858 NA coding downstream 81638 47965281 ~ 47968121 (+)
XLOC_008859 NA coding downstream 109252 47992895 ~ 47993604 (+)
XLOC_008463 BX663520.1 misc upstream 26629688 21252191 ~ 21252282 (+)
XLOC_008850 NA non-coding upstream 134075 47746901 ~ 47747895 (+)
XLOC_008848 CU655829.1 non-coding upstream 156635 47721873 ~ 47725335 (+)

Expression


Co-expression Network