CI01000030_10164557_10167430


Basic Information

Item Value
gene id CI01000030_10164557_10167430
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10164364 ~ 10169382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10164557_10167430.mRNA
CTATATAAGTAAAAGTGACTTCAAATATATTCTTAATCACAGAATGTGGATAAATGTTCCTTTTCAAACTGAAAGTCAAAGCATGTTTTATGTTTTTCATATCCACATGTTATGTGTCTTTCCCCCCAAAACAAGATCATTCAATCATCTGTTGGTTTGTGTTTCAGGTGTTTCTGCTGCTGAACAAAATAAAATGAAGAGAAAGTCACTGAAGGAGGGAGAATCTGTTACTTTAGATCCTGGTGAAGTAAGAAAACCAAAAGATATGATGTGGTATTTTAATGACACTCTAATTGCTGAAATCACTGGAGATCAGAGTAAGATCTGTACAGATGATCAGTGTGATGAGAGATTCAGAGACAGACTTAAAGTGAATCAGACTGGATCTCTGACCATCACAAACACCAGAAACACAGACTCTGGAGAATATAAACTATGGATCAACAGCAGCAGATTCAGCATCATTAGGAGCTTCAGTGTTTCTGTCACTGCTGTTCCAGATTCAGGTCTGTCTCCAGGTGCTGTAGCAGGAATAGTTGTTTTTCTTCTTCTTCTGCTGCTCGCTGCTGTTGGTTTGGTTTTCTATCGCCACTGGAGATCTAGGAAACAAGGCAAGTACTGTATACAGCTGATTGTACAAAATGAAACAGGACAGCTGGCGATGATCAGGAGAATGAAGAAGGAGTGGCTCTTGAGGATATCTAAACAGATGGATGAAGATAATGAGGTGTCCTTAATCGGACAGAGACGCAGCAGATGATTGTCACTGATGGGGTGTCCTTAATCAGATTAAGGGCCCTATTTTAACAATCTAAGCACATGGTCTGAAGAACATGGCGCAGGTGCACTTAGGGCATGTCCAAATCCACTTTTGCTAGTTTAACGACAGGACAAATGGTGGGCACACCAGGTGCATGGTCTAAAAGGGTTGTACCTCGCCTATAAGTGCATATTACTCACACCCCCTTTAAATAACAAAAGAAAAAAAAATACTGCACCATTGACTTTAGACCAGGGGCACGTTCAATCTCAAACCGGTGCACAACATTTTGCTACGGTTTCCAGGTTGAACGACATGTTTCCTGGAAACGATGTGCAACGGGGTTTGAGATATGTTTTCTCTTGTTTGGTGGGTGTGTCAAAAATGTCAGCCCAATCAGCATCAACATGTATATAAACCACGCGGTATTAAAGAGACAGCTCGCACAATGGGTCCAAGTAAAGTCGTTTACAAATGTGTCCACTGCAGCTTGGTATACGCAACAATTGAAGATATTAGAAGACATGCTTGTCGTAAGAGTTTTATAGTAAAAATATAGCATATCAATTCTTCAAAAAGAACACAAAGAATGGCCTTCTTAGCTGCCATAGTTGCAACTCTTGTGTCATCAGAACAGGGTGTTCAACACACCATCGTTTCCGTTTAAAAAATGTTTTGTCGGGGCTAAACGCAGCCCAGGTTTCAGTTGGTCAATGATGGAATCCTTTTCAGTTGCCTCAAAATAGCAACACACCAACAACGCACCTGAACACAACACATTTTCAGACCAGCACGCCCATGTGCGAACAGATGGGCGTGAGTGCATTTGCTATTTAAACAACGTGGGCACGACGTGAAAAGAGAATGTTCTCAGAACTTTAATTAATGTTCTGGCAAGATTTTCTTCCAGTAACATTAATAGAATACTGATTCAGAGTTATTTGGTTTTTAATAATATTCTCAATGTCATTATTTATACATCATTCATGGGGAATTTTTTTTCTGGGAATTATTGTTTTGCTTATGTGTTTGTGTTGTAGAATATTATCACTGTGTGATGGAAATGATCGTCTGCACTTGAACAGGAAAAGTATGTTGACCCCAGTTTAAATGTCATGTTTGTCTGAACAATGGAAAAGACCTGTAACTGTGCAAATCTCTCAGGTTTATCAGAGCTGTTTCCAGAGTATGAATATATGAATGAATATATGAATGTATGAATGAATATATGAATGTCTTCTTACAATGCAAAGAAGCTTGAACGAGCTCTGTATGTTCATGTGCTAGATGCCATTAAAATGGGTCTAATTAACTAATAACAGCTGTAATCTGTGAATTTGTCATGATGATGTAATTAGAATGAACTGAACTAAGCAAAAACTGGATTTTTTGAAAAGCCCTTCATCTGCATGCAGACACACTTAAAAGCACTCTGAAAACAACCACACACTTAATACTACATGTTCATGCAGAACCTGTCTGTCCACCAACAGATTAAACCACATTTAATTACAGAAGTAAATGAAATGCATGTATTTTGCATCTGTAGTTCTCTTGTACATACGTTAGTATCATGGCCTAAATTAGTTTTGAGACTTTATAGTCAGACATGAAAATACTGGGCCGTACGATACAGATAATTGTTAAAAGTGCTTGTATTACAAAGCAACTTCTTTTGAAGATTCTAAGGGATTGTTTAATCAGTCCATCTCTGAATTGATTTTAAATCACCCAGAATCCCTCACAGTTATTCTGTGATCAACCTGTGAAATTGTGAAGAGAACTATGATTGTAAACTGAATTTCTCTGGTAGTGCATCTTATCTGTAAGAAAGGGAATCAGAGGTTATTCTTGTCAAGGAAGTTGAGAGACTTTTTTTGTCAGTCAAGGTGTTTTGTAAACAGTTTACATTAGTTTAATTTAAAGTCCGGATTGACGAGTAACATCTGCAA

Function

NR:

description
hypothetical protein cypCar_00048543, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10164557_10167430.mRNA True 2712 mRNA 0.38 4 10164364 10169382

Neighbor

gene id symbol gene type direction distance location
CI01000030_10148536_10153337 NA coding upstream 10925 10147217 ~ 10153439 (+)
CI01000030_10140982_10145096 NA coding upstream 19175 10139883 ~ 10145189 (+)
CI01000030_10134835_10135293 NA coding upstream 28234 10134835 ~ 10136130 (+)
CI01000030_10099125_10101681 NA coding upstream 62204 10098958 ~ 10102160 (+)
CI01000030_10039688_10047019 NA coding upstream 117154 10039358 ~ 10047210 (+)
CI01000030_10178017_10185588 NA coding downstream 6094 10175476 ~ 10188119 (+)
CI01000030_10199403_10226165 NA coding downstream 29729 10199111 ~ 10226880 (+)
CI01000030_10246173_10256836 NA coding downstream 75028 10244410 ~ 10256912 (+)
CI01000030_10259762_10274068 NA coding downstream 90332 10259714 ~ 10274169 (+)
CI01000030_10304328_10313568 NA coding downstream 134946 10304328 ~ 10313627 (+)
G162334 NA non-coding upstream 32793 10115690 ~ 10131571 (+)
G162350 NA non-coding upstream 68769 10087916 ~ 10095595 (+)
G162583 NA non-coding upstream 82904 10017898 ~ 10081460 (+)
G162574 NA non-coding upstream 145241 9982711 ~ 10019123 (+)
G162634 NA non-coding downstream 24715 10194097 ~ 10195201 (+)
G162633 NA non-coding downstream 59262 10228644 ~ 10238283 (+)
G162632 NA non-coding downstream 67744 10237126 ~ 10237654 (+)
G162650 NA non-coding downstream 115281 10284663 ~ 10299194 (+)
G162355 NA non-coding downstream 128291 10297673 ~ 10490876 (+)
G162449 NA other upstream 807350 9356403 ~ 9357014 (+)
G162137 NA other upstream 1592638 8568010 ~ 8571726 (+)
G161986 NA other upstream 1616039 8544582 ~ 8548325 (+)
G162088 NA other upstream 1924760 8237965 ~ 8239604 (+)
CI01000030_10473378_10509560 NA other downstream 322064 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 569199 10738087 ~ 10751548 (+)
G162821 NA other downstream 696630 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 1171373 11362114 ~ 11380772 (+)
G162951 NA other downstream 1323219 11492601 ~ 11496119 (+)

Expression


Co-expression Network