XLOC_008856


Basic Information

Item Value
gene id XLOC_008856
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47897252 ~ 47900007 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018803
accgtgccgcccatctaggaaagcaggaggagtagaggtggaaggggggattcttcaaaaccaaGATGGCTGTGATGTGGAgctgagggtatttatagtggctcaggaatcgtctgattggtgaatcatacattgaataatgcgggaccagctgtgatcaatcataatcacgtgatcctctccacATTAGTGTAGAAATAAACGTCACAAAGTACAGATATtagtgtaaaaatgtaagaagtaaaagtgAAAAGTTGTCAGGaaaataagtagtggagtaaagtactgatacttCCCATCTCTGCTTATCTTatttcaaaccactaaaatgtcaacatcccatgatgcaattcaccaccgaaaacaaacacaaaacacactgaaGAAACGGATCATTACAGATATTATTTCTGCCGTGTATCTCCAGCGCTCTGGTACAGTTGGATAGACACAATTAAACAACCGttttcaccctgctttgactttTAATTTGTCGAATACTTTAACGTGAAgcgaagtttaacagagcaagccaACTATACTAATCTATTGTACAGATACTGTTTAtctagttttgttttttcaaccatattgtacagtgtgtgtgtgtctgtgtgtgtgtgtgtggctttatTCCAGTGGACATACAGTATAATGGTCGATATTTACTGGTGTATATACTGTGCAGGTGAAGCAGTTCTACGCTTTCCATGTCAAACACAAACTGctttattcaataattcaataattcaataattcaataattcacaaCAGATTCTCCAAAACCAGACGGACATTCAGTTTCCAGTGATCTTCAGcagataatacacacacacacacacacacagatatacaaatacacacatccaTACTCACATCAATTAAACACGCACACACTTTgaatacatgtacacacataaacacttcagatgcacacacatatatacacacacctcagatatacaaacacatatttcagatatacacacacacacatacccgaGATACACAccccagatacacacacacacacctcagATAAACACACATCtcggacacacacatacacacacctcagATACACACCTCAGataaacacacacctcagatacacacatatacacacatacacccacttcaaaaacacagacacacacacacacacacacacacacacacctcagatACACTGTGCAGTTTCACATCTTCACAATCCtttattctgtgtgatttatgaggcGTTCTCCTTGTGGAGACAAAACaagccttacacacacacacacacacacacacacacacacacagcagacgtCTGCATGGTCTTCATGATCTCCTGTTTACTGCAAAGTAACGTTAGTAACAGTCTCTCGGTCAGTTGCTGTTGCTCAGGAGATAGGGGCGGAGTCAGTCGTCTCCAGCACGTACAGATTACAGAGTCCTGATTGGTCGTCACACATTCGCTTCTCCATGACAACAGTTCTGTTGATTCAAATATACATTgatattgagtgtgtgtgtgtgtgtgtgtgtattcaagttagtatttgtgtgtgtgagaaagaggtGTGTGTAGGTTCAGATAAATGTATGttcaggtgagtgtgtgtgtgtgtgtgtgtgtgtatttaagttgtctttgtgtaatgtgtttgctaaggtatgtgtgtgtgtatgtgttatgtatattatatatatgtgtgtgtgtgttatatgtatgtgtctgtgtgttatgtgtgagtgtgtgcttgttttatataaatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaatataagtgtgtgtgtgtgagttatttttgtgtgtgttatatatgtgtgtgtgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacacacacacacagagaagaatAATGTCAGACGAGACTCACTGTCTATCAGCACCAGCAGAGTGTCTGCatccaactgactcagctgaacCCGGTCAGCACTGCGGCtctctacaacacacacacacacacacacacacacacacacacaaacacgcacgcagagagagaaagagagatggtcAGACATTATACTTgattgaaggtgtgtgtgtgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccgagTCCGGTGTCGGTGAACCAGCTGGTGTTGGAGTTGAGGTCTATGTAGTCCAGCTGTAGGGGCTGTGCAGCgctgcgccccctgctggcccgGATGTAGACCTGTGGATACTCCTGCTCCGCCACCGCCAGCATCTGGAACAGTCTCAGCGGCGTCGGCAGCGGGAACTCAAATTGCTGACGGGAAACACCCAAATCAAACAAGAGTGTATGTTCAGCACCATCACAGCAGACGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018803 True 2466 lncRNA 0.41 3 47897252 47900007

Neighbor

gene id symbol gene type direction distance location
XLOC_008855 NA coding upstream 13609 47881970 ~ 47883643 (+)
XLOC_008852 CU682604.1 coding upstream 21539 47838836 ~ 47875713 (+)
XLOC_008854 NA coding upstream 39081 47857614 ~ 47858171 (+)
XLOC_008853 NA coding upstream 44901 47850879 ~ 47852351 (+)
XLOC_008851 CU633855.1 coding upstream 65836 47828719 ~ 47831416 (+)
XLOC_008857 otx5 coding downstream 3857 47903864 ~ 47909281 (+)
XLOC_008858 NA coding downstream 65274 47965281 ~ 47968121 (+)
XLOC_008859 NA coding downstream 92888 47992895 ~ 47993604 (+)
XLOC_008463 BX663520.1 misc upstream 26644970 21252191 ~ 21252282 (+)
XLOC_008850 NA non-coding upstream 149357 47746901 ~ 47747895 (+)

Expression


Co-expression Network