XLOC_008858


Basic Information

Item Value
gene id XLOC_008858
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47965281 ~ 47968121 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019091
AATAACATTGAACATTCAACAATATTGTGAGAACTTGATATTAAACtaccataataataaaatattgttgtaTATAATCAACACAGATTTGTGGCATTCCAATTAATAATCCAGTtgggtattttatttattaatgtgtttatttgtttagattTAAGGATTTTTAATAAGGAAATCTGTCTCTAAATAGTGGATTACTCACTAAGAACGCGTCCATTTAATGTTCTTTGTTTGATATTTAGCCCTATTTATGTTGTCTTCGAAATAAGTTCAAGAAATAAAGTGTAAAGAGTAGTAAGATCATCAATCTGAGGCTTGAGTTGACACTGATTGACTCTTTATTTTGGTGCAGGATGCCTGATTGTGTGGGTTCAGTGTAAATGTTACACTGATTGAGGTTGATAATCCATCAGTGTCGTCTGTCTGAGGGGCTGGTGTTGGGTTAGTCTAAATATCTGACTTTAATTCGTCATTTGCTTTAACTCTTACCCGTAATTCCACAGGGTCTTTCCCTTTAACTCTCTGGGAATATAGAACAATATTCCTGCTCTGTTTTATTAAGGAAAGCTACACATCAGTGTCTACAtgtttatatttagcattataaTTGAGATATTAtattacatgcatgtatttgaaatgttttatttggttttatttaagaCGTGAAATGGTATAACTTTTAGATAACAGCATAAATGCATTTACATAATGATATGTGTGTGATGTCAGTCAATGTTTCTaggattgtgttgtttttgtgattATGTGAAATgagtggtttgttcttttgcagcTCTTCAGAAACCTTTGACGAAGTGAAAAGGCGTTCAGGTGAGACTTCAGGATAGCTTTAGTTCGTTTCTTCACTATTTTACGGCAATGACAAAAAGAAGTCCTTATATACATGTCATCTTAAGCAAAGGTTATACATTTTTGGCAATagagtcagtttgattcatttctcatTAAAGAGACTCAGGTTGAGATTCATTTCTCATGATGGAGTCAGTTTGATTCGTTTCTCATGATggagtcagtttgattcatttctcaCGATGGAGTCAGTTTGATTCGTTTCTTATGATggagtcagtttgattcatttctcgTGATGGAGTCAGTTTGATTCGTTTCTTATGATggagtcagtttgattcatttctcatAATGGAGtcaattttattcatttctcatgatggagtcagtttgattcatttctcaCGATGGattcagtttgattcatttctcatgatggagtcagattGATTTATTTCTCATGATggagtcagtttgattcatttctcatgatggagtcagtttgattcatttctcatGATGGAGTCAGTTTGATTCGTTTCTCATGATGGAGTCAGTTTGATTCGTTTCTCTTGATggagtcagtttgattcatttctcataatggagtcagtttgattcattaCTCATAATGGATTCGGTTTGATTAATTTCTTATAAAGGAGTCAGTTTGATTCGTTTCTCATAATGGAGTCAGTTTGATTCGTTTTTTATAATggagtcagtttgattcatttctcataatggagtcagtttgattcattaCTCATAATGGAGTCGGTTTGATTAATTTCTTATAAAggagtcagtttgattcatttctcgTGATGGTCAGTTTGATTTGTTTCTCATGATGGAGTCAATTTGATTCGTTTCCCATGATGGAGTCAGTTTGATTCGTTTGTCACGATGGAGTCAGTTTGAATCGTTTTTCATGATAGAGTCAGTGTGATTCATTTCTCATGATggagtcagtttgattcatttctcatGATGGAGTCAGTTTGATTCGTTTCTTATGATGGAGATAGTTTGATTAGTTTCTCATGATGGAGTCAGTTTGATTCGTTTCTCTTGATggagtcagtttgattcattaCTCATAATGGAGTCAGtttgattcatttctcgTGATGGAGTCAATTTGATTCGTTTCTCACGATTAAGTCAGTTTGATTCATTACTCATAATggagtcagtttgattcatttctcgTGATGGAGTCAGTTTGAATCGTTTCTCATggagtcagtttgattcattaaTGTGAATTGTTAAACAGATAACCGTGTGTGTTCTGACCTGATGTGTTGTGTTTTCTGCTTTCAGTCGTGTTGTTCTCAGTCCCACCCCGCACAAACCTTCAGTCTCACATGCACTTTGACCTTCCTGGATGTGGTGCATTCTGGGAAATCAGACTGGACACTGGTCCTGGAGGACGGGATGTTCGCTGGACTCACTTTTACACACTTTATAAATTATTTCAGCCTCATGTTCCTGTTTCAATGCCAATCAAATGGAAGCGAATCACAAACAAGTACTTTAAAGGTCACAGgtcacgcgtgtgtgtgtgtgcgtgcgtgtttatAAGAATGTGTAAATATCATGGCAGAATTACCATAATAATTATGATTCATAAATATGTTTACAGCTTGTAGTTTCAGATGTGTTTTCTCCATTATTGATTGATATTTTCATAGCTAGACAATTTAATGTAGTTATGCTGTAATTTATATAGTTTACCTATAATTAATAATTGTGAATgttagattgtgtgtgtgtgtgtgtatatatatatatatatatacacacacacacacatacacaaatcaaCAGAATACAGGTAAGTGGGCTAATGCTGCGCTCACACtcgagtttgagcatgtgaaattctgtcatacggcgctgtgaaaaggggcggggttAAACAAATGAGTAgccatttaaaaagcgagcgattggtcca
>TCONS_00018804
TTCAGAAACCTTTGACGAAGTGAAAAGGCGTTCAGTCGTGTTGTTCTCAGTCCCACCCCGCACAAACCTTCAGTCTCACATGCACTTTGACCTTCCTGGATGTGGTGCATTCTGGGAAATCAGACTGGACACTGGTCCTGGAGGACGGGATGTTCGCTGGACTCACTTTTACACACTTTATAAATTATTTCAGCCTCATGTTCCTGTTTCAATGCCAATCAAATGGAAGCGAATCACAAACAAGTACTTTAAAGGTCACAGgtcacgcgtgtgtgtgtgtgcgtgcgtgtttatAAGAATGTGTAAATATCATGGCAGAATTACCATAATAATTATGATTCATAAATATGTTTACAGCTTGTAGTTTCAGATGTGTTTTCTCCATTATTGATTGATATTTTCATAGCTAGACAATTTAATGTAGTTATGCTGTAATTTATATAGTTTACCTATAATTAATAATTGTGAATgttagattgtgtgtgtgtgtgtgtatatatatatatatatatacacacacacacacatacacaaatcaaCAGAATACAGGTAAGTGGGCTAATGCTGCGCTCACACtcgagtttgagcatgtgaaattctgtcatacggcgctgtgaaaaggggcggggttAAACAAATGAGTAgccatttaaaaagcgagcgattggtcca

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0015833 peptide transport biological_process
GO:0046907 intracellular transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0071702 organic substance transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0034613 cellular protein localization biological_process
GO:0051641 cellular localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0070727 cellular macromolecule localization biological_process
GO:0008104 protein localization biological_process
GO:0017119 Golgi transport complex cellular_component
GO:0012505 endomembrane system cellular_component
GO:0099023 vesicle tethering complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019787 ubiquitin-like protein transferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019091 False 2785 lncRNA 0.35 2 47965281 47968121
TCONS_00018804 True 672 lncRNA 0.39 2 47966080 47968121

Neighbor

gene id symbol gene type direction distance location
XLOC_008857 otx5 coding upstream 56000 47903864 ~ 47909281 (+)
XLOC_008856 NA coding upstream 65274 47897252 ~ 47900007 (+)
XLOC_008855 NA coding upstream 81638 47881970 ~ 47883643 (+)
XLOC_008852 CU682604.1 coding upstream 89568 47838836 ~ 47875713 (+)
XLOC_008859 NA coding downstream 24774 47992895 ~ 47993604 (+)
XLOC_008463 BX663520.1 misc upstream 26712999 21252191 ~ 21252282 (+)
XLOC_008854 NA non-coding upstream 107110 47857614 ~ 47858171 (+)
XLOC_008853 NA non-coding upstream 112930 47850879 ~ 47852351 (+)
XLOC_008851 CU633855.1 non-coding upstream 133865 47828719 ~ 47831416 (+)

Expression


Co-expression Network