XLOC_000886 (MFAP4)


Basic Information

Item Value
gene id XLOC_000886
gene name MFAP4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59073203 ~ 59089598 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001386
GAACACACACGGTGAGTGACTTATTCTGTAGAGCGAGATTATACGAAGAAATAACCTGCAACAATAAGAAGGTGTGAGTGAAGCTCTTTTACATCTCTTGTAGATAAACTGAGCTGTTGAGGAGAGAGTGAGAAGATGGCAATCGTGCTGTTCTTGGCGACGCTTCTCTCTGCTGCTTTGGCCAGTGACTGTACATCCATGCCCTTCGACTGTTCTGACATCTACAAATCAGGAGAAACTCTCAGTGGGGTTTACACCATCTATCCAGCCGGGGAAACTCCAGTCTGGGTTTACTGTCAGATGCTCTCAGATGGGAAAGATGAAGAGAACGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAATGTGGAGGGAGAATACTGGCTGGgaCTAGAGAACCTCTACCAGCTGACACGACACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTGTCTGGATTCACTGATGGAGGAGCAGGCGACTCTTTATCTCCCCATAATGGAATGAAGTTCTCCACCTTTGACAAAGACCAAGACACATATGAAAAGAACTGTGCTAAAGAGTTTCTCGGGGGATTTTGGTACTCATCCTGTCACAATACGAACCCCAACGCTGTGTATTTATGGGAAGAAGATGTAACTCATCA
>TCONS_00001387
GAACACACACGGTGAGTGACTTATTCTGTAGAGCGAGATTATACGAAGAAATAACCTGCAACAATAAGAAGGTGTGAGTGAAGCTCTTTTACATCTCTTGTAGATAAACTGAGCTGTTGAGGAGAGAGTGAGAAGATGGCAATCGTGCTGTTCTTGGCGACGCTTCTCTCTGCTGCTTTGGCCAGTGACTGTACATCCATGCCCTTCGACTGTTCTGACATCTACAAATCAGGAGAAACTCTCAGTGGGGTTTACACCATCTATCCAGCCGGGGAAACTCCAGTCTGGGTTTACTGTCAGATGCTCTCAGATGGGAAAGATGAAGAGAACGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAATGTGGAGGGAGAATACTGGCTGGggTTGGAGAACCTCTACCAGCTGACCCGCCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTTTCTGGATTCACTGATGGAGGAGCAGGTGACTCTGTATCTACCCATAATGGAATGAAGTTCTCCACTTTTGATAAAGACCAAGACACCTATGAAAAGAACTGCGCTAAAGAGTTTCTTGGTGCGTTTTGGTACTCGGCCTGTCACAATGCAAACCCCAACGGTGTGTATTTATGGCATGAAGGCAGCACACACAATGCCATTGGCGTTTCTTGGTACAGCTGGAAAGGGAATAACGCGGTCAGTATGAAAACCATCAGCATCAAGATCAAACAAGTGCCTTAGAAACAGGGCTTTTAAAAGGAAACCTCTTCTCTTTTAAATGTGTATCTGAAAAATCGAGTCTGAAATGTATGGCTGTTGGTGTAATGAcatttttctctttgttttcaCTTTAAAGCTTTAATAAACTCCTGTATGCAGATTT
>TCONS_00001388
ATCGTGCTGTTCTTGGCGACGCTTCTCTCTGCTGCTTTGGCCAGTGACTGTACATCCATGCCCTTCGACTGTTCTGACATCTACAAATCAGGAGAAACTCTCAGTGGGGTTTACACCATCTATCCAGCCGGGGAAACTCCAGTCTGGGTTTACTGTCAGATGCTCTCAGATGGGAAAGATGAAGAGAACGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAATGTGGAGGGAGAATACTGGCTGGgaCTAGAGAACCTCTACCAGCTGACACGACACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTGTCTGGATTCACTGATGGAGGAGCAGGCGACTCTTTATCTCCCCATAATGGAATGAAGTTCTCCACCTTTGACAAAGACCAAGACACATATGAAAAGAACTGTGCTAAAGAGTTTCTCGGGGGATTTTGGTACTCATCCTGTCACAATACGAACCCCAACGCTGTGTATTTATGGGAAGAAGATGTAACTCATCATGCCATTGGTGTGTCTTGGTACAGCTGGAAAGGGACTCACGCTGTCAGTATGAAAACCATCAGCATGAAGATCAAACAAGTGCCTTAG
>TCONS_00001389
TTTTGACACAGAGCACGAGACTCAGCATCAGCTATTTAAAGGAGCGTTTGAGTTATTTCCAGCTGAACACACACGATAAACTGAGCTGTTGAGGAGAGAGTGAGAAGATGGCAATCGTGCTGTTCTTGGCGACGCTTCTCTCTGCTGCTTTGGCCAGTGACTGTACATCCATGCCCTTCGACTGTTCTGACATCTACAAATCAGGAGAAACTCTCAGTGGGGTTTACACCATCTATCCAGCCGGGGAAACTCCAGTCTGGGTTTACTGTCAGATGCTCTCAGATGGGAAAGATGAAGAGAACGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAATGTGGAGGGAGAATACTGGCTGGggTTGGAGAACCTCTACCAGCTGACCCGCCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTTTCTGGATTCACTGATGGAGGAGCAGGTGACTCTGTATCTACCCATAATGGAATGAAGTTCTCCACTTTTGATAAAGACCAAGACACCTATGAAAAGAACTGCGCTAAAGAGTTTCTTGGTGCGTTTTGGTACTCGGCCTGTCACAATGCAAACCCCAACGGTGTGTATTTATGGCATGAAGGCAGCACACACAATGCCATTG
>TCONS_00001390
GAACACACACGGTGAGTGACTTATTCTGTAGAGCGGGATTATACGAAGAAATAACCTGCAACAATAAGAAGGTGTGAGTGAAGCTCTTTTACATCTCTTGTAGATAAACTGAGCTGTTGAGGAGAGAGTGAGAAGATGGCAATCGTGCTGTTCTTGGCGACGCTTCTCTCTGCTGCTTTGGCCAGTGACTGTACATCCATGCCCTTCGACTGTTCTGACATCTACAAATCAGGAGAAACTCTCAGTGGGGTTTACACCATCTATCCAGCCGGGGAAACTCCAGTCTGGGTTTACTGTCAGATGCTCTCAGATGGGAAAGATGAAGAGAACGGAGGATGGACGGTGATTCAGAGGAGGATGGACGGCAGTGTGAATTTCTATCGGCCGTGGAGAGACTACAAGAGAGGATTCGGGAATGTGGAGGGAGAATACTGGCTGGggTTGGAGAACCTCTACCAGCTGACCCGCCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTTTCTGGATTCACTGATGGAGGAGCAGGTGACTCTGTATCTACCCATAATGGAATGAAGTTCTCCACTTTTGATAAAGACCAAGACACCTATGAAAAGAACTGCGCTAAAGAGTTTCTTGGTGCGTTTTGGTACTCGGCCTGTCACAATGCAAACCCCAACGGTGTGTATTTATGGCATGAAGGCAGCACACACAATGCCATTGGCGTTTCTTGGTACAGCTGGAAAGGGAATAACGCGGTCAGTATGAAAACCATCAGCATCAAGATCAAACAAGTGCCTTAGAAACAGGGCTTTTAAAAGGAAACCTCTTCTCTTTTAAATGTGTATCTGAAAAATCGAGTCTGAAATGTATGGCTGTTGGTGTAATGAcatttttctctttgttttcaCTTTAAAGCTTTAATAAACTCCTGTATGCAGATTTA

Function

symbol description
mfap4 Predicted to enable antigen binding activity; carbohydrate derivative binding activity; and signaling receptor binding activity. Involved in elastic fiber assembly; regulation of collagen metabolic process; and response to UV. Located in several cellular components, including collagen-containing extracellular matrix; elastic fiber; and microfibril.

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0001867 complement activation, lectin pathway biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2246 Predicted to enable antigen binding activity; carbohydrate derivative binding activity; and signaling receptor binding activity. Predicted to be involved in complement activation, lectin pathway and elastic fiber assembly. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in hematopoietic system; macrophage; and nervous system. Orthologous to human MFAP4 (microfibril associated protein 4).

Ensembl:

ensembl_id ENSDARG00000088745 ENSDARG00000089667

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001386 False 776 mRNA 0.47 5 59073203 59074427
TCONS_00001387 False 1006 mRNA 0.45 5 59073203 59089597
TCONS_00001388 False 723 mRNA 0.48 4 59073436 59074515
TCONS_00001389 False 756 mRNA 0.48 6 59088205 59089375
TCONS_00001390 True 1007 mRNA 0.45 5 59088269 59089598

Neighbor

gene id symbol gene type direction distance location
XLOC_000885 MFAP4 coding upstream 1075 59067978 ~ 59072128 (+)
XLOC_000884 pin1 coding upstream 7252 59062603 ~ 59065951 (+)
XLOC_000883 cdc37 coding upstream 59150 59007536 ~ 59014053 (+)
XLOC_000882 CABZ01083166.1 coding upstream 72964 58990121 ~ 59000239 (+)
XLOC_000881 thumpd1 coding upstream 87318 58981985 ~ 58985885 (+)
XLOC_000887 mfap4 coding downstream 985 59090583 ~ 59092056 (+)
XLOC_000888 FP015850.1 coding downstream 41694 59131292 ~ 59131406 (+)
XLOC_000889 NA coding downstream 48285 59137883 ~ 59138594 (+)
XLOC_000890 gpr108 coding downstream 53185 59142783 ~ 59146016 (+)
XLOC_000891 gpr108 coding downstream 56700 59146298 ~ 59151058 (+)
XLOC_000879 NA non-coding upstream 96516 58975017 ~ 58976687 (+)
XLOC_000878 NA non-coding upstream 113746 58956066 ~ 58959457 (+)
XLOC_000876 NA non-coding upstream 218826 58853170 ~ 58854377 (+)
XLOC_000874 NA non-coding upstream 290911 58778053 ~ 58782292 (+)
XLOC_000871 NA non-coding upstream 404128 58646685 ~ 58669075 (+)
XLOC_000893 NA non-coding downstream 72367 59161965 ~ 59162831 (+)
XLOC_000894 NA non-coding downstream 158532 59248130 ~ 59251679 (+)
XLOC_000896 NA non-coding downstream 222932 59312530 ~ 59313528 (+)

Expression


Co-expression Network