CI01000030_10911224_10918511


Basic Information

Item Value
gene id CI01000030_10911224_10918511
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10908366 ~ 10918929 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10911224_10918511.mRNA
GTATAAAAAAGATACACGACGCCAGAGTTGCACTTGTCTTAGACTTCACAAGTAAAATGCATAGTCAACAAAACCTTTTTGCCAAATGAATCACAGAAACGTATGCACTTAATTTGTTCTTATGCATTTTTAAAAATAGCATTTTGGTTCTTGGTAATATGTGAATGTGGATTATGGTCTTTTTTTTTTTTTTTTTGAATAAGCCCTTTTTAACTTCTCTCTGAGGTAGAGTTGAAAATGTTCTCTAGGCTTATAATCAAAAATAGGAGAACTACATTGGTTTGTTGCAAATTTACAGATAATGCAATTGAGATGTTTACATTTGCTTGTTGGGGTAATATTGCTTGTCAACTGACAACAAAGTTCCCCATTTGTATCAGCATATAATTGCACATGTTTTATAGTTAATGAAATATTTAAAAACAAGATGCATTAATTATACATTAATTTCCCTTAATAAAAAAGTAAATTGAATAAGACGGTGTTAAAGGTGCGAGTGTGGATTAGTAATCTGGCCCCTTGGTATGAAGGAGAAACAATGTTGCCCCTCGTCACTATCGAAGTTGCCCATCCCTGATGTAGAGGATTCTTGGCCTTCACGTCACTTTCACCTTAAAGAAAAAAAAGAAATAGTGCAATAGTTGATGTTATATCTGCTATGTTTATGTTCACATGTTTATTACCCAGAACAAGTGCACGTCTATATGTAACCTGTTCACCACAGTGGCTTGCACACACACAAACAGATGACTATGTCCACTATGTAGAAAGGGTTGAAAAAAGAGACTAAAAATATTCAACATTTTAGTGCACCAGTGTCCTGCTGGAGAGGAGAAACATTCACAGACTGTGATGATGCACTTCCACAGTTTTTAACATCTATCAAAGTTTATGTATTTTTATGTTGTTTTTTTTGTTGTTTTTTTGGAAGTGACTCTAAATTTGACATATTTCTCTCTTCTGACTGCCTTAATCAATCTATTTTTGAAAGTCGTGTAAACACTGGAATCCTGGAAGTGTGAAAAGAGTTCATATGGGGAAACAAACTCATTACATAAATGTATGTTATTCAGTACATTTACATAAAACAAATAGTAATCGGCCTACCCTTATGGAACAAAAATATATGGGAAATTTTCTGCAAAATATAATGTGATATATTACATAATACATTTCCATATATGGGAAACTAGTGCTTATATTTTTCAATATACTGCAATGTATGCATTGACCATTTATGGTTATATATTACATTTAAAATATTTAGAAATGAAGACAAAAATAGCATTACATGTAATATTCATAAAGTTTTATCCTTTATTGTGTACATATATTGCACATACATATTCCCATATAAATGTGAATGTATGCACACACATATACACACACATTCACAGAATGAGTTACAGCAGATTTTTAGTTCCCAGCATGCTTTGCTTCTGACTGTTAAAGGAGAATAAATGTTAAAATTAGGTGCTATTTCATATGTTTTTCTCAATATAGGGGGAGCTTTTCAATATATGAAAAGCAGCAATTCCTTATGTATTATTCAATATATTGTAATATATTAACACAATATGTTATTCTGTATATTTTCAAATATACTGTTAAATCATTTAATATATTGATTCATTCATAGGAAAATATATTTTCTTTGCATAAGGGTATGTTTTAGATGTATATGTAGTTTATGCAAGAAAATCTTCAAGACGTACAAAAATAATAATTTAATTATAATTGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAAAGAATAAACAATCCAAACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCACGGCAAATCAAGACTTCGCAAAGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACAATAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATAGTGGCCTCCACAAGTATTGAGACAGTAAAGACAAAATTGCTCTGTTAGCTGTGGTGTCAAGACATCTACAAATATGATTAAATGATTAATGAGGCAGAAGTACAGAATGTCACATTTTATTATTGGCTGTTTCAACACTAAATGTTTTACCAACTAATAAGTACAGCACTTTTGGACAGTGGTGTGATGTAACGAAATAATAATACTTCGTTACAGTACTTGAATATTTTTTGGGAGAATCTGTGCTTTACTTGAGTTTTTATATTTCTGTCAACTTTTACTTTTACTCCACTACATTTCCTAAATAAAATGTATACTTTTACTCTGATACATTTTCCCAAAGTATTTTCGTTACTTACTACAAAATAAAGTCGGAGGAACACAGACTGGTGGGAATTTAATCCCATAGGATCCCATGGGTTTATATATCTGTCAAAATGTCACGCCAAGATTCGAACCGCTTCCTGAACCAGTCAGGTGGAAGCGAGGCTTCAGACCTCATCAATGACGTCATTGGTCTAAAGCGATACAAGCCTCGATTCCTAACTTCACTGAAAACTTCCGGGATTTCTTGGCACGCTCCAAAGCCTCGGCACAGAAACTCGTCTGTCATTTTATTACTGAACCAGTTTGAAGAGTTTGTCTTTTCATATTTGTGGACTGAAACCGTTGAAGATGTTTCACCCTGTTTTGTTCTGTTTGTGTTTGTGGCGTCTGGTGGGTTTTTTATTGATGAAGTGACTGTGAATAAAGGAGATTCAGTCACACTCAAAATGTATTTTTTTGAAATTCTGGATGATGATGTGTATCAGTGGTTTGGACCTGAACACACTTTAATAGCTGAAATCAATAAACAGTTTGACAGCTTCACTGTATATGATGGTGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGAACAATCAAACTGGATCTCTGACCATCACAAACACCAGACCTGAACATACTGGACCTTATCAACTAAAGATCAACAGTACTGTGATCAAGAATTTCTTTCTCTGGGTCATTGTTAAAGTGTCAGTGAAGGAGGGAGATTCAGTCACTCTGAACTCTGATCTTACTGAAATGAAGGATGATGATGAGATTCAGTGGAGGTTTAAAAACACTTTAATTGCTGAAATCAATAAACGGGCCGACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACACACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACACCACAACTGAACATGCTGGAGATTATGAACTGAAGATCAACAGTGTGAGGATTGAATGCATTCTCACTGTCTTTGGTGAACTTAAGTCAGTGTCAGTGATGGAGGGAGATTCAATCACTCTAAACTCTGATCTTACTGAAATACATGACAGTGATCTGATTCTGTGGTGGTTTGAAAACATTTTAATAGCTGTAATCAATAATCAGGTCAACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACATCACAACTGAACATGCTGGAGTTTATGAGCAACAGATGTCTTCAAGAGAATTCTTTCTCGTAAAAGCATTCAGTGTTTCTGTCTATGACTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCATTCTTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACAAGATCAAGCACAGATTCACACATCAGGAAACTAAATGATGTAATTTCTCATAACTATTTCAATCATTTATTAATCTTCTTTTATTTTAATGGTTTTATATTCATCTGTTGGTATCGGTGTTTATTTATCGGCGGCTCATTTCCACCCTAGAAAATCATTTGAAAACAAAAAGCAACAAATTCTCACTTTAATGCTCAAAGTATCAAATGTGACAGTTTATCATGACAAATATACTGAACATTACAAAAGATCGCTTTGCTCACACTAGATTAGTTAGTATAACATACTTTCCCTTTTTAACTTGTTTTTTAACCTTTTTTTTTTTTACAGTCTAATTTTTTATATTTGATTGGGGGCTTTAAACACTTAAAGGATCTTGTGTGTCTTTCATTGTGATTATTGTTCAGTCAGAGCTGGTTAATGGTGTTCAGATCAGACGTCTCTAATAATAA
>TU184952
AAACAATCCAAACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCACGGCAAATCAAGACTTCGCAAAGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGAT

Function

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10911224_10918511.mRNA False 4632 mRNA 0.34 6 10908366 10918929
TU184952 True 230 lncRNA 0.46 1 10910334 10910563

Neighbor

gene id symbol gene type direction distance location
CI01000030_10860938_10862107 S1PR4 coding upstream 46074 10860768 ~ 10862292 (+)
CI01000030_10775818_10796010 NA coding upstream 111713 10773601 ~ 10796653 (+)
CI01000030_10766284_10769462 NA coding upstream 138882 10766284 ~ 10769484 (+)
CI01000030_10753303_10762765 NA coding upstream 145601 10753303 ~ 10762765 (+)
CI01000030_10738658_10751094 NA coding upstream 156818 10738087 ~ 10751548 (+)
CI01000030_10936461_10939911 NA coding downstream 17532 10936461 ~ 10940790 (+)
CI01000030_10958494_10960930 TNFAIP8L1 coding downstream 38228 10957157 ~ 10962204 (+)
CI01000030_10968005_10969830 NA coding downstream 48177 10967106 ~ 10970051 (+)
CI01000030_10993343_11015527 ZFR2 coding downstream 74414 10993343 ~ 11015855 (+)
CI01000030_11017331_11024754 MATK coding downstream 98402 11017331 ~ 11025102 (+)
G162830 NA non-coding upstream 9918 10896840 ~ 10898448 (+)
G162827 NA non-coding upstream 25785 10882356 ~ 10882581 (+)
G162822 NA non-coding upstream 37186 10870534 ~ 10871180 (+)
G162819 NA non-coding upstream 51274 10856858 ~ 10857092 (+)
G162818 NA non-coding upstream 51898 10856049 ~ 10856468 (+)
G162855 NA non-coding downstream 55832 10974761 ~ 10975108 (+)
G162859 NA non-coding downstream 62569 10981498 ~ 10982379 (+)
G162762 NA non-coding downstream 134344 11053273 ~ 11091871 (+)
G162875 NA non-coding downstream 184408 11103337 ~ 11103651 (+)
G162892 NA non-coding downstream 297058 11215987 ~ 11234587 (+)
G162821 NA other upstream 39926 10866012 ~ 10868440 (+)
CI01000030_10473378_10509560 NA other upstream 406723 10471835 ~ 10511071 (+)
G162297 NA other upstream 687142 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 862483 10039358 ~ 10047210 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 421826 11362114 ~ 11380772 (+)
G162951 NA other downstream 573672 11492601 ~ 11496119 (+)

Expression


Co-expression Network