CI01000030_11047852_11057798 (CHERP)


Basic Information

Item Value
gene id CI01000030_11047852_11057798
gene name CHERP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11047762 ~ 11057798 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_11047852_11057798.mRNA
ATTTAAAAACGAGTTATTTTGTTTCGCGCCTCAGCGTCATGTGTTATAAATGAATTCCTGGTCTGATTCTAGCGCGTAATCTTGAGAAAGATGGATATTTCCACGCCACCAGAAGATCAAGAGCTGCGAAATGTCATTGACAAACTGGCCCAGTTTGTCGCCCGAAATGGACCCGAGTTTGAGAAGATGACCATGGAGAAGCAGAAGGACAACCCCAAGTTCTCGTTTCTGTTTGGAGGGGAATATTTCGGCTACTACAAATACAAACTGGCCATCGAACAGCAGCAGCATTCTGGCAGTCATGATGATGAATATAAAATGGAAGTGCTCTGTAAGCCTCCGGGTAAAGAGGTCGCTGATGTTCCCGCGACGATGGCGATGCTCGCGCCTCCGCCGATCCCGCCTACGACACCGTCAGTGGAGGAGCTCATCCAGCAGAGCCAGTGGAACCTACAGCAGCAGGAGCAACACCTGCTCAGCCTCAGACAGGAGCAGGTGACGGCCGCCATCTCTCTGGCGATGGAGCAGCAGACGCAGAAGCTGCTGGTGGAGACGCAGCTGGACATGAACGAGTTGGACAACCTCCTTCAGCCCATCATAGACACCTGCACCAAAGACGCCATCTCGGCTGGAAAGAACTGGATGTTTGGTAACGCTAAGACCCCGCAGCACTGCGAACTGATGGCTTCGCATCTCCGAAACCGCATCACCGCGGACGGGGCGCACTTCGAGCTCCGCCTGCATCTCATCTATCTCACCAACGACGTCCTGCATCACTGTCAGAGGAAAAATCAGAAGGATCTTTTGGCAGCTCTACAGAAGGTCGTGGTTCCCATTTACTGCACCAGCTTCCTGGCTGTAGAGGAAGACAAGCAGCAGAAAATCACACGGCTACTGCAGCTCTGGGAGAAGAACGGATACTTTGACGATATCACTATTCAGCAGCTTCAGAGTCCTGCTCTGGGCCTCGGGCAGTATCAGGCGTCTCTCATCACGGAGTACGCGCAGGTGGTGCAACCCATCCAGCTGACGCCTGCCGACACCGAAGTGAAGAGCCAAGCGCCCATGAGTTCTCAGCCTGGAGAACTGAAGCCTCCATTGGCCGGTCCTCCACCTGCTGATTACGAAGGCGCTCAGAACCGACCCTCAGACTCGAACCCCTCAGCGTCACCGGACATTCCTTCCTCTAAACCCGGCTGGTTCGAGTCACAGCACAACATGCCGTCATGGAACCCGCAACAGCCTCCGCCATTCGACCCCACTCAAGTCCCGCCCCCCTGCCCGCCCTGGAACAGCCATGAGGGCATGTGGAACGAGCAGCGGGACCCCAACTGGAGCGGCCCTCGGGACGGCGGCCCCGGAGGCCCCTGGAGCGGCCAGAATGAGCCCCCGCCCTCCTGGAGCGGCCAGTTCGACCAGCCGCCGTGGAGCAACCAGCCGGACCAGCCACCGCCGTGGGGTCAAAGGGAGCCTCCGTTCCGCATGCAGCGTCCGCCACATTTCCGCGGCCCGTTCCCTCCCCACCAGCAGCCACCGCCGTTCAACCAGCCGCCACCGCCGCCTCACAACTTTGGACGCTTCCCGCCCCGCTTCATGCAGGACGAGTTTCCTCCCCGGCACCACTTTGAACGGCCACCATATCCGCCCCACCATTTCGACTATCCGCAGGGAGACTTCCCAGGAGAGATCGGCCCGCCTCCCCATCACCACCCGAACCAGAGGATTCCCCCTCCAGGAATGTCTGATCCTCCTCCGTGGGGCGGAAACCAGCATCCTGAATTCGGACCGCCTCCTCACGGCTTTAATGGCCAGGCGCCGCACATGCGACGGCAGAACCCCGCTCACGTCAGTCAGGACGACCCCAGCCTGGTCCCCAACGTGCCCTACTTTGACCTGCCGGCGGGACTCATGGCGCCGCTTGTTAAGCTTGAAGATCACGACTATAAGCCTCTGGACCCCAAAGACATCCGTCTGCCGCCGCCGATGCCTCCTAGTGACCGTCTGCTGGCCGCAGTGGAGGCGTTTTACAGCCCGCCATCTCACGACAGGCCCAGAAACAGTGAGGGTTGGGAACAGAACGGTCTGTACGAGTTCTTCCGGGCCAAAATGAGAGCGAGGCGGAAAAAGGAACAAGACAAACGCAACAGGAGCAGGAGTCGCTCCAGATCCAGGTCCAGAAGCCGCTCCCGCTCCAGATCTCGCTCCAGGTCACGATCTCCAGACAAGCGTCGCCAGGCCGCGAAATCCCGCAGTCCGACGCCACCCTCCACGTCTGGGTTGGGTTCAGGTCCTGCCGCGTTACCCGTCGACCTCAGGCTGGGCGAAGAAAACAAGGGCCATCAGATGCTCATGAAGATGGGCTGGAGCGGATCAGGAGGTCTTGGTGCTAAAGAACAGGGCATTCAAGATCCCATCAAAGGAGGAGACATCCGGGACAAGTGGGACCAGTATAAAGGAGTGGGAGTCCCGCTGGATGACCCATATGTGAACTACAGGAGAAACAAAAGCTACAATTTTGTCGCAAGGATGAAAGCACGCGAAAAAG

Function

symbol description
cherp Predicted to enable RNA binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within RNA processing. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein).

GO:

id name namespace
GO:0006396 RNA processing biological_process

KEGG:

id description
K12841 CHERP; calcium homeostasis endoplasmic reticulum protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_11047852_11057798.mRNA True 2545 mRNA 0.58 18 11047762 11057798

Neighbor

gene id symbol gene type direction distance location
CI01000030_11035570_11040272 RX1, RAX2 coding upstream 6529 11035257 ~ 11041233 (+)
CI01000030_11017331_11024754 MATK coding upstream 22660 11017331 ~ 11025102 (+)
CI01000030_10993343_11015527 ZFR2 coding upstream 31907 10993343 ~ 11015855 (+)
CI01000030_10968005_10969830 NA coding upstream 77711 10967106 ~ 10970051 (+)
CI01000030_10958494_10960930 TNFAIP8L1 coding upstream 85558 10957157 ~ 10962204 (+)
CI01000030_11067119_11069478 NA coding downstream 9236 11067034 ~ 11069525 (+)
CI01000030_11074061_11090319 NA coding downstream 15887 11073685 ~ 11090476 (+)
CI01000030_11101642_11111505 NA coding downstream 42885 11100683 ~ 11113022 (+)
CI01000030_11114957_11124683 NA coding downstream 57070 11114868 ~ 11125104 (+)
CI01000030_11168935_11171909 NA coding downstream 110612 11168410 ~ 11172305 (+)
G162859 NA non-coding upstream 65383 10981498 ~ 10982379 (+)
G162855 NA non-coding upstream 72654 10974761 ~ 10975108 (+)
CI01000030_10911224_10918511 NA non-coding upstream 137199 10908366 ~ 10918929 (+)
G162830 NA non-coding upstream 149314 10896840 ~ 10898448 (+)
G162827 NA non-coding upstream 165181 10882356 ~ 10882581 (+)
G162875 NA non-coding downstream 45539 11103337 ~ 11103651 (+)
G162892 NA non-coding downstream 158189 11215987 ~ 11234587 (+)
G162891 NA non-coding downstream 167862 11225660 ~ 11252096 (+)
G162893 NA non-coding downstream 176925 11234723 ~ 11236919 (+)
G162895 NA non-coding downstream 188870 11246668 ~ 11253729 (+)
G162821 NA other upstream 179322 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 307211 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 546119 10471835 ~ 10511071 (+)
G162297 NA other upstream 826538 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 1001879 10039358 ~ 10047210 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 282957 11362114 ~ 11380772 (+)
G162951 NA other downstream 434803 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005996 LOC106613681 coding CM030142.1 CM030142.1 14187248 ~ 14198914 (-)