CI01000030_11563241_11581907 (KDM4B)


Basic Information

Item Value
gene id CI01000030_11563241_11581907
gene name KDM4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11563241 ~ 11581907 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_11563241_11581907.mRNA
ATGGACCCGTCTTTACCTCCAGACCCAATCCCAGAGGCACTCGCAGAGTCCGAACCTGCCTTAGACGTGACTTCACAAGCTGACGCTGCCCAGGATTCACCTGTAGAAAACACCTCGGATTCGAATCCGCAGCCATGCGAGGAACCGGTTTCAGTTCCAGCCCAGGAACCATCTGCAGAACCAACCCTGACCTCAGAAATAAAGCCTGAACCATCTGCAGCAGAAATTACACCAGAACCACAGGCCCCAGCACCTCCTCCACCGGCGAACTTCTACAAGATCATGACCTTCAGACCCACCATGGAGGAGTTCAAGGACTTTGGAAAGTACATGGCTTATATCGAGAGCCAAGGAGCTCATCGAGCTGGTCTGGCAAAGGTTATTCCACCGAAGGAGTGGAAGCCACGGCGTTCCTATGATACCATTGAAGACATGGTCATTCCCGCTCCCATCATGCAAGTGGTGACCGGCCAGTCGGGACTCTTTACACAATACAACATCCAGAAGAAGTCCATGACGGTCGGAGAATATCGCAAACTGGCCAATAGTAAAAAGTACTGCACCCCTCAACACAAGGACTTTGATGACCTGGAAAGGAAATACTGGAAAAACCTGACGTTTGTGTCGCCCATTTACGGTGCCGACATCAGCGGCTCCCTCTATGACCAGGACATCACGGAGTGGAACATCGGCCATCTGAACACTCTTCTGGACATGGTGGAGCAGGAGTGTGGGATCGTCATCGAGGGTGTGAACACACCTTACCTGTATTTCGGCATGTGGAAAACCACCTTTGCCTGGCACACGGAGGACATGGACCTCTACAGCATCAACTACCTGCATTTCGGGCAACCAAAGTCCTGGTATGCAATTCCTCCCGAGCACGGCAAGAGGTTGGAGAGGCTGGCGCAAGGTTTCTTCCCAGGAAGTTCTCAGGGCTGCGACGCGTTTCTCCGTCACAAGATGACCCTCATTTCTCCATCGATCCTGAAGAAGTACAGCATCCCCTTTGACAGAATCACTCAAGAAGAGGGCGAGTTCATGATCACGTTCCCGTACGGATATCATGCCGGATTCAACCACGGATTCAACTGCGCCGAATCCACCAACTTCGCAACCCTGCGCTGGATCGATTACGGCAAGATGGCCACGCAG

Function

symbol description
kdm4b Predicted to enable histone demethylase activity (H3-K9 specific). Predicted to be involved in chromatin remodeling. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in caudal hematopoietic tissue. Human ortholog(s) of this gene implicated in several diseases, including autistic disorder; gastrointestinal system cancer (multiple); head and neck cancer; malignant peripheral nerve sheath tumor; and withdrawal disorder. Orthologous to several human genes including KDM4B (lysine demethylase 4B).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06709 KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_11563241_11581907.mRNA True 1155 mRNA 0.53 7 11563241 11581907

Neighbor

gene id symbol gene type direction distance location
CI01000030_11550703_11555403 UHRF1 coding upstream 7645 11550703 ~ 11555596 (+)
CI01000030_11464522_11490298 FBN2B coding upstream 72613 11464522 ~ 11490628 (+)
CI01000030_11437923_11444045 NA coding upstream 119192 11437627 ~ 11444049 (+)
CI01000030_11382916_11385905 NA coding upstream 176902 11382371 ~ 11386339 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding upstream 182469 11362114 ~ 11380772 (+)
G162975 NA non-coding upstream 128977 11434048 ~ 11434264 (+)
G162974 NA non-coding upstream 129215 11433795 ~ 11434026 (+)
G162964 NA non-coding upstream 139684 11411382 ~ 11423557 (+)
G162955 NA non-coding upstream 167658 11391639 ~ 11395583 (+)
G162954 NA non-coding upstream 171623 11391320 ~ 11391618 (+)
G162951 NA other upstream 67122 11492601 ~ 11496119 (+)
G162821 NA other upstream 694801 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 822690 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 1061598 10471835 ~ 10511071 (+)

Expression


Co-expression Network