G157149


Basic Information

Item Value
gene id G157149
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 197543 ~ 197976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU178432
AGATTATAGAAGATTTTACATTTAAATGCATTTGAAAAGTCATTGAAAGTTAAACAAAAAATAATAATAATAATAATAATAATAATAAAATAAAAAATAACAAACATCTTTTCAACTAGAGTCCCCCCAGTGAATCTCAGCCATTTCCAGCCCTGCCTACAGTGCAGTAAAGCACACATCCTGTTATTGCAAAGAAACAAGACAACATACATCACAACAGAAATGAAAGTTGTTCCTTAATGAAAGTCTAAATCTGTCTCCATTATGACAGTTTATAACCCTTGTCTTTTACTGATGTACTTCCACTTCCGAGCCGCTGAGCGATGTTTGTTGTGTTGGTTCATCCTGTTGCTCCAAAGTTCTGCTCTTACAGTCGCTACAAATGACGACAATCAAGACGGAAATGCAGATAACTGACAGTAAAGCTAAAGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU178432 True 434 lncRNA 0.35 1 197543 197976

Neighbor

gene id symbol gene type direction distance location
CI01000030_00023913_00029855 BZW1, BZW1A coding upstream 167008 23913 ~ 30535 (+)
CI01000030_00476829_00484029 GTPBP1, GTPBP1L, GTPB1 coding downstream 278853 476829 ~ 484029 (+)
CI01000030_00753779_00759287 NA coding downstream 555755 753731 ~ 759320 (+)
CI01000030_00760361_00762546 NA coding downstream 562385 760361 ~ 762817 (+)
CI01000030_00811105_00836626 GPC5B coding downstream 613129 811105 ~ 836748 (+)
CI01000030_00857611_00858359 NA coding downstream 659494 857470 ~ 858858 (+)
G157145 NA non-coding upstream 3875 193365 ~ 193668 (+)
G157125 NA non-coding upstream 15188 180944 ~ 182355 (+)
G157140 NA non-coding upstream 19154 178185 ~ 178389 (+)
G157138 NA non-coding upstream 21206 176092 ~ 176337 (+)
G157133 NA non-coding upstream 33333 163929 ~ 164210 (+)
G157192 NA non-coding downstream 60531 258507 ~ 263669 (+)
G157201 NA non-coding downstream 75981 273957 ~ 277116 (+)
G157243 NA non-coding downstream 174383 372359 ~ 392298 (+)
G157245 NA non-coding downstream 183471 381447 ~ 381979 (+)
G157250 NA non-coding downstream 197828 395804 ~ 471388 (+)
G157108 NA other upstream 50690 116156 ~ 146853 (+)
G157076 NA other upstream 179787 12878 ~ 17756 (+)
G157227 NA other downstream 129673 327649 ~ 356483 (+)
CI01000030_01003310_01003776 NA other downstream 805301 1003114 ~ 1003795 (+)
G157726 NA other downstream 1438891 1636867 ~ 1638227 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 2081137 2277208 ~ 2282743 (+)
G158416 NA other downstream 2397900 2595876 ~ 2614293 (+)

Expression


Co-expression Network