G157255


Basic Information

Item Value
gene id G157255
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 491100 ~ 492540 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU178562
TTTGTGTTCCGAAGATGAACGAAGGTGGGTGAATGACACGAGGGTGAGTAATAAATGGCAGAATTTTAATTTTTTTTGTGAACTAACCCTTTAAGTCATACGATAGCTTTGTGCGAGAAACAAACTGAAATTTAAGTCGTTATTTACTGATATTCTTATTCCACTGTTAATTGTTGTAAGCAAATTGAGTCAGTGTGTAAATAATGATGGTTCTTTTGCATCACAAAAGTACCATAAAAGTGGTCCATAATACTTGTGTGCTATATTTCAAGTCTTCTCAAGTTGTACGATAGCTTTGCACGGAAAACAAAGCGAATTTAAGTTATTTACTGATATTCTTCCCCTACTGTTAATCATTGTAAGCAAATCGAATGAATCATTCAGATGGTTTTGTGACTCAAAGATCTGACTCAAAAGAATGATTTGTATACAAATTAGTCGACAACACATATCTCATGAACTTTACATAGAGATGTAGGGTGGACGCCAATATATTTTATATATATATAATTTTGGTCTGTTTCTTACGCAAAGCTTACTTGCCATAGAAGTCATGTGGACCACATTTATGGTGCTTTTGAAGCTTGAAAACAATAGTTCCCAGTTTAATTGTGAAAAGAGCAACTGTTGCACAAAAGAAAGAAAGTCATTCAGATTTGGAAAGACTGTAGGGTGAGTAAATGACCAAATTTTCACTTTTGGGTGAACTATATCTTTAAATATAAACCCTAATTGGAGTTGATATGAAGTGGAGAATATGAAGCCCATGGTAAAATACAAATCCAGACCAAAAGAGTTCTACACCGAAAACTTCAAATCTTGTCTATCAGGATACAGTTTCATAATGTCCATTGCAATTTTTTGACAAAAGAAAAACACAATGCCCACACAATTGAACATAAATAGCTTTCATTTACATAGTTTTCATGAGCCCAATGCTGCATTCACAGAAGGCATTGTTCATGGCAGTTCTGGTTCTTGTTCTTGGGTTTGATCTGCTGTTCTTATTTTTTGAATCAATAAAGGTGAACCACAAGGTCTGTACTATCAGGAAGATCTTTAGACATTGATTTTAGTTTTATCCGAGGCAGCCAAGTAGATTTGAACTTTACAAGCCAAGTACATTTTTTGCACATGATCTCTACAAGTTCAGTCAGAACATTGCATGAAGACCATGCAAGCCCTTAAGTTATGCAAAATAGATTTTCTTCAGGAACCTGGTGGATAATATTATTATTATTTTTTTTTTTAATTTATTTTTTTTTTTCCTGCCCCAGGGCTGGTACGTAGTATGATTTTCAGACAAAAATAGTTTGAAGTTTTAGAGCATTCAGTGCATTGGATTTTTTTAAAGTTATTTTCTTTTTGATTCAATCCCCGTTTAGTGCATTGTTTCCGTTCTTGCATTAAAAATGTATGTACATTATGTACAAATGAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU178562 True 1441 lncRNA 0.33 1 491100 492540

Neighbor

gene id symbol gene type direction distance location
CI01000030_00476829_00484029 GTPBP1, GTPBP1L, GTPB1 coding upstream 7071 476829 ~ 484029 (+)
CI01000030_00023913_00029855 BZW1, BZW1A coding upstream 460565 23913 ~ 30535 (+)
CI01000030_00753779_00759287 NA coding downstream 261191 753731 ~ 759320 (+)
CI01000030_00760361_00762546 NA coding downstream 267821 760361 ~ 762817 (+)
CI01000030_00811105_00836626 GPC5B coding downstream 318565 811105 ~ 836748 (+)
CI01000030_00857611_00858359 NA coding downstream 364930 857470 ~ 858858 (+)
CI01000030_00873074_00886771 GPC1A coding downstream 379404 871944 ~ 886807 (+)
G157250 NA non-coding upstream 19712 395804 ~ 471388 (+)
G157243 NA non-coding upstream 98802 372359 ~ 392298 (+)
G157245 NA non-coding upstream 109121 381447 ~ 381979 (+)
G157201 NA non-coding upstream 213984 273957 ~ 277116 (+)
G157192 NA non-coding upstream 227431 258507 ~ 263669 (+)
G157281 NA non-coding downstream 6954 499494 ~ 499878 (+)
G157292 NA non-coding downstream 17550 510090 ~ 510325 (+)
G157294 NA non-coding downstream 18822 511362 ~ 511706 (+)
G157301 NA non-coding downstream 33443 525983 ~ 526236 (+)
G157303 NA non-coding downstream 48350 540890 ~ 541196 (+)
G157227 NA other upstream 134617 327649 ~ 356483 (+)
G157108 NA other upstream 344247 116156 ~ 146853 (+)
G157076 NA other upstream 473344 12878 ~ 17756 (+)
CI01000030_01003310_01003776 NA other downstream 510737 1003114 ~ 1003795 (+)
G157726 NA other downstream 1144327 1636867 ~ 1638227 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 1786573 2277208 ~ 2282743 (+)
G158416 NA other downstream 2103336 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 2520916 3018776 ~ 3043773 (+)

Expression


Co-expression Network