Gene
RNA
| Item | Value |
|---|---|
| gene id | G157336 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 918129 ~ 921555 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU178657 | True | 3392 | lncRNA | 0.37 | 2 | 918129 | 921555 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_00873074_00886771 | GPC1A | coding | upstream | 31322 | 871944 ~ 886807 (+) |
| CI01000030_00857611_00858359 | NA | coding | upstream | 59271 | 857470 ~ 858858 (+) |
| CI01000030_00811105_00836626 | GPC5B | coding | upstream | 81381 | 811105 ~ 836748 (+) |
| CI01000030_00760361_00762546 | NA | coding | upstream | 155312 | 760361 ~ 762817 (+) |
| CI01000030_00753779_00759287 | NA | coding | upstream | 158809 | 753731 ~ 759320 (+) |
| CI01000030_00937645_00942188 | LPL | coding | downstream | 16090 | 937645 ~ 942822 (+) |
| CI01000030_00945680_00950479 | NA | coding | downstream | 24125 | 945680 ~ 950916 (+) |
| CI01000030_01003310_01003776 | NA | coding | downstream | 81559 | 1003114 ~ 1003795 (+) |
| CI01000030_01091944_01093682 | KLF2A | coding | downstream | 170144 | 1091699 ~ 1094481 (+) |
| CI01000030_01134054_01144773 | STIL | coding | downstream | 212499 | 1134054 ~ 1145322 (+) |
| G157431 | NA | non-coding | upstream | 20713 | 896867 ~ 897416 (+) |
| G157349 | NA | non-coding | upstream | 29094 | 887808 ~ 889035 (+) |
| G157403 | NA | non-coding | upstream | 116985 | 800910 ~ 801144 (+) |
| G157314 | NA | non-coding | upstream | 334249 | 583624 ~ 583880 (+) |
| G157313 | NA | non-coding | upstream | 334696 | 577147 ~ 583433 (+) |
| G157438 | NA | non-coding | downstream | 11128 | 932683 ~ 933112 (+) |
| G157443 | NA | non-coding | downstream | 15006 | 936561 ~ 936855 (+) |
| G157452 | NA | non-coding | downstream | 58834 | 980389 ~ 980764 (+) |
| G157337 | NA | non-coding | downstream | 59946 | 981501 ~ 984600 (+) |
| G157454 | NA | non-coding | downstream | 90877 | 1012432 ~ 1012687 (+) |
| G157227 | NA | other | upstream | 561646 | 327649 ~ 356483 (+) |
| G157108 | NA | other | upstream | 771276 | 116156 ~ 146853 (+) |
| G157076 | NA | other | upstream | 900373 | 12878 ~ 17756 (+) |
| G157726 | NA | other | downstream | 715312 | 1636867 ~ 1638227 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | downstream | 1357558 | 2277208 ~ 2282743 (+) |
| G158416 | NA | other | downstream | 1674321 | 2595876 ~ 2614293 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | downstream | 2091901 | 3018776 ~ 3043773 (+) |
