Gene
RNA
| Item | Value |
|---|---|
| gene id | G157631 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 1467222 ~ 1467855 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU178974 | False | 344 | lncRNA | 0.31 | 1 | 1467222 | 1467565 |
| TU178975 | True | 432 | lncRNA | 0.38 | 1 | 1467424 | 1467855 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_01453143_01466193 | NA | coding | upstream | 944 | 1453143 ~ 1466278 (+) |
| CI01000030_01433149_01437563 | VPS4B.S, VPS4B, MGC82073 | coding | upstream | 29292 | 1433149 ~ 1437930 (+) |
| CI01000030_01426277_01431670 | ANKRD29 | coding | upstream | 35552 | 1426277 ~ 1431670 (+) |
| CI01000030_01410955_01422296 | TTC39C | coding | upstream | 44488 | 1410955 ~ 1422734 (+) |
| CI01000030_01390854_01409470 | NA | coding | upstream | 57699 | 1390854 ~ 1409523 (+) |
| CI01000030_01480370_01481206 | IER5 | coding | downstream | 12183 | 1480038 ~ 1481702 (+) |
| CI01000030_01504763_01508773 | TAL1 | coding | downstream | 36843 | 1504698 ~ 1509004 (+) |
| CI01000030_01514203_01515696 | PDZK1IP1 | coding | downstream | 43790 | 1511645 ~ 1516475 (+) |
| CI01000030_01636207_01648294 | TM2D1 | coding | downstream | 168352 | 1636207 ~ 1648603 (+) |
| CI01000030_01683292_01689297 | NA | coding | downstream | 214161 | 1682016 ~ 1689371 (+) |
| G157572 | NA | non-coding | upstream | 189160 | 1277295 ~ 1278062 (+) |
| G157528 | NA | non-coding | upstream | 196963 | 1267594 ~ 1270259 (+) |
| G157581 | NA | non-coding | upstream | 217433 | 1249527 ~ 1249789 (+) |
| G157567 | NA | non-coding | upstream | 255501 | 1211503 ~ 1211721 (+) |
| G157559 | NA | non-coding | upstream | 271025 | 1195850 ~ 1196197 (+) |
| G157649 | NA | non-coding | downstream | 26047 | 1493902 ~ 1518773 (+) |
| G157853 | NA | non-coding | downstream | 353433 | 1821288 ~ 1821735 (+) |
| G157856 | NA | non-coding | downstream | 355849 | 1823704 ~ 1823918 (+) |
| G157857 | NA | non-coding | downstream | 358886 | 1826741 ~ 1827034 (+) |
| CI01000030_01003310_01003776 | NA | other | upstream | 460535 | 1003114 ~ 1003795 (+) |
| G157227 | NA | other | upstream | 1110739 | 327649 ~ 356483 (+) |
| G157108 | NA | other | upstream | 1320369 | 116156 ~ 146853 (+) |
| G157076 | NA | other | upstream | 1449466 | 12878 ~ 17756 (+) |
| G157726 | NA | other | downstream | 169012 | 1636867 ~ 1638227 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | downstream | 811258 | 2277208 ~ 2282743 (+) |
| G158416 | NA | other | downstream | 1128021 | 2595876 ~ 2614293 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | downstream | 1545601 | 3018776 ~ 3043773 (+) |
| G159685 | NA | other | downstream | 2963945 | 4431800 ~ 4488526 (+) |
