Gene
RNA
| Item | Value |
|---|---|
| gene id | G158397 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 2105402 ~ 2159275 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU179865 | False | 1696 | lncRNA | 0.38 | 4 | 2105402 | 2159275 |
| TU179864 | True | 1223 | lncRNA | 0.40 | 3 | 2155569 | 2158950 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_02094695_02098284 | RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB | coding | upstream | 6645 | 2094695 ~ 2098757 (+) |
| CI01000030_02058151_02072387 | RABGAP1L | coding | upstream | 32892 | 2057847 ~ 2072510 (+) |
| CI01000030_02039525_02050052 | RABGAP1L | coding | upstream | 55172 | 2038298 ~ 2050230 (+) |
| CI01000030_02025674_02036478 | NA | coding | upstream | 67455 | 2023299 ~ 2037947 (+) |
| CI01000030_01985397_02017638 | GPR52 | coding | upstream | 87208 | 1985397 ~ 2018194 (+) |
| CI01000030_02161055_02163914 | POLR2E | coding | downstream | 1488 | 2160763 ~ 2163914 (+) |
| CI01000030_02256592_02257308 | NA | coding | downstream | 97255 | 2256530 ~ 2257589 (+) |
| CI01000030_02260437_02262817 | NA | coding | downstream | 101105 | 2260380 ~ 2262817 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | coding | downstream | 117933 | 2277208 ~ 2282743 (+) |
| CI01000030_02289500_02291562 | HAPLN4, HPLN4 | coding | downstream | 130225 | 2289500 ~ 2292428 (+) |
| G158412 | NA | non-coding | upstream | 15319 | 2086038 ~ 2090083 (+) |
| G158441 | NA | non-coding | upstream | 22170 | 2076526 ~ 2083232 (+) |
| CI01000030_01972795_01974531 | NA | non-coding | upstream | 63345 | 1972795 ~ 1975434 (+) |
| G157855 | NA | non-coding | upstream | 194798 | 1910204 ~ 1910604 (+) |
| G157857 | NA | non-coding | upstream | 278368 | 1826741 ~ 1827034 (+) |
| G158487 | NA | non-coding | downstream | 98951 | 2258226 ~ 2258504 (+) |
| G158488 | NA | non-coding | downstream | 99954 | 2259229 ~ 2259454 (+) |
| G158490 | NA | non-coding | downstream | 102278 | 2261553 ~ 2261843 (+) |
| G158508 | NA | non-coding | downstream | 145222 | 2304497 ~ 2312470 (+) |
| CI01000030_02423347_02426071 | NA | non-coding | downstream | 232040 | 2422768 ~ 2426301 (+) |
| G157726 | NA | other | upstream | 467175 | 1636867 ~ 1638227 (+) |
| CI01000030_01003310_01003776 | NA | other | upstream | 1098715 | 1003114 ~ 1003795 (+) |
| G157227 | NA | other | upstream | 1748919 | 327649 ~ 356483 (+) |
| G157108 | NA | other | upstream | 1958549 | 116156 ~ 146853 (+) |
| G157076 | NA | other | upstream | 2087646 | 12878 ~ 17756 (+) |
| G158416 | NA | other | downstream | 436601 | 2595876 ~ 2614293 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | downstream | 854181 | 3018776 ~ 3043773 (+) |
| G159685 | NA | other | downstream | 2272525 | 4431800 ~ 4488526 (+) |
| G159816 | NA | other | downstream | 2357503 | 4516778 ~ 4517381 (+) |
