G158487


Basic Information

Item Value
gene id G158487
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2258226 ~ 2258504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU179958
GGACCATCTCCCCACAAATGACGTGCCCTAATGGGCACTGCAGCAAAACGGCTGCCCACTCCTCTGGATGTGTGTTCACTACTGTGAATGTGGACTTAAATTGGTTAAATGTAAAAAAAGGTTTGATTTTGGCAAATGTAATGGCCCTTTCACACCAAAAGTGAAAGGAATAGCCTAACTGCAGAAGAACTGATGACAGCACGGTTTAATGTTTGGTTGACCAATCAGCGGAAAGGGGTCATTCCCGCCCACATGTAGAGATCAAATATTCAAGTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179958 True 279 lncRNA 0.44 1 2258226 2258504

Neighbor

gene id symbol gene type direction distance location
CI01000030_02256592_02257308 NA coding upstream 637 2256530 ~ 2257589 (+)
CI01000030_02161055_02163914 POLR2E coding upstream 94312 2160763 ~ 2163914 (+)
CI01000030_02113302_02119860 HNRNPM coding upstream 138160 2112957 ~ 2120066 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding upstream 148344 2104123 ~ 2109882 (+)
CI01000030_02094695_02098284 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding upstream 159469 2094695 ~ 2098757 (+)
CI01000030_02260437_02262817 NA coding downstream 1876 2260380 ~ 2262817 (+)
CI01000030_02277208_02282376 TM6SF2 coding downstream 18704 2277208 ~ 2282743 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding downstream 30996 2289500 ~ 2292428 (+)
CI01000030_02423347_02426071 NA coding downstream 164264 2422768 ~ 2426301 (+)
CI01000030_02452403_02456555 NR2C2AP coding downstream 193899 2452403 ~ 2456871 (+)
G158439 NA non-coding upstream 84079 2096494 ~ 2174147 (+)
G158397 NA non-coding upstream 98951 2105402 ~ 2159275 (+)
G158412 NA non-coding upstream 168143 2086038 ~ 2090083 (+)
G158441 NA non-coding upstream 174994 2076526 ~ 2083232 (+)
CI01000030_01972795_01974531 NA non-coding upstream 216169 1972795 ~ 1975434 (+)
G158488 NA non-coding downstream 725 2259229 ~ 2259454 (+)
G158490 NA non-coding downstream 3049 2261553 ~ 2261843 (+)
G158508 NA non-coding downstream 45993 2304497 ~ 2312470 (+)
G158548 NA non-coding downstream 167990 2426494 ~ 2426775 (+)
G157726 NA other upstream 619999 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1251539 1003114 ~ 1003795 (+)
G157227 NA other upstream 1901743 327649 ~ 356483 (+)
G157108 NA other upstream 2111373 116156 ~ 146853 (+)
G157076 NA other upstream 2240470 12878 ~ 17756 (+)
G158416 NA other downstream 337372 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 754952 3018776 ~ 3043773 (+)
G159685 NA other downstream 2173296 4431800 ~ 4488526 (+)
G159816 NA other downstream 2258274 4516778 ~ 4517381 (+)

Expression


Co-expression Network