G158490


Basic Information

Item Value
gene id G158490
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2261553 ~ 2261843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU179961
CCCAGATGTTGTGAGCGCACACAGGCACATGGGGGCCATACACACTACTAGGGCTGCACGGTTATGACAAACATAATTTTCGATAATTCCCTTGAAATTGTAATTGTAATTATTAATTACGATTAGCACAGTTTACACTGAATTATGTTTTGAATAGCTTTATATGATTATTTGAAGCAACTGCATGCCATGTTGAAATGAATATATGAAAATAAGCAAGCTGCACTCTTCCTGAAAAGCTTTTACTTTTCCTTAACATTAAGCCTCAAATGTCATTGGTTTGGTTTCTTT

Function

NR:

description
RNA polymerase-associated protein RTF1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179961 True 291 lncRNA 0.35 1 2261553 2261843

Neighbor

gene id symbol gene type direction distance location
CI01000030_02256592_02257308 NA coding upstream 3964 2256530 ~ 2257589 (+)
CI01000030_02161055_02163914 POLR2E coding upstream 97639 2160763 ~ 2163914 (+)
CI01000030_02113302_02119860 HNRNPM coding upstream 141487 2112957 ~ 2120066 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding upstream 151671 2104123 ~ 2109882 (+)
CI01000030_02094695_02098284 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding upstream 162796 2094695 ~ 2098757 (+)
CI01000030_02277208_02282376 TM6SF2 coding downstream 15365 2277208 ~ 2282743 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding downstream 27657 2289500 ~ 2292428 (+)
CI01000030_02423347_02426071 NA coding downstream 160925 2422768 ~ 2426301 (+)
CI01000030_02452403_02456555 NR2C2AP coding downstream 190560 2452403 ~ 2456871 (+)
CI01000030_02466855_02469633 NA coding downstream 204742 2466585 ~ 2470573 (+)
G158488 NA non-coding upstream 2099 2259229 ~ 2259454 (+)
G158487 NA non-coding upstream 3049 2258226 ~ 2258504 (+)
G158439 NA non-coding upstream 87406 2096494 ~ 2174147 (+)
G158397 NA non-coding upstream 102278 2105402 ~ 2159275 (+)
G158412 NA non-coding upstream 171470 2086038 ~ 2090083 (+)
G158508 NA non-coding downstream 42654 2304497 ~ 2312470 (+)
G158548 NA non-coding downstream 164651 2426494 ~ 2426775 (+)
G158555 NA non-coding downstream 185166 2447009 ~ 2447452 (+)
CI01000030_02531026_02532411 NA non-coding downstream 248958 2530509 ~ 2534232 (+)
G157726 NA other upstream 623326 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1254866 1003114 ~ 1003795 (+)
G157227 NA other upstream 1905070 327649 ~ 356483 (+)
G157108 NA other upstream 2114700 116156 ~ 146853 (+)
G157076 NA other upstream 2243797 12878 ~ 17756 (+)
G158416 NA other downstream 334033 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 751613 3018776 ~ 3043773 (+)
G159685 NA other downstream 2169957 4431800 ~ 4488526 (+)
G159816 NA other downstream 2254935 4516778 ~ 4517381 (+)

Expression


Co-expression Network