G158548


Basic Information

Item Value
gene id G158548
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2426494 ~ 2426775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU180021
AAAACAGTAGGCTAATTGGCTTCATAATGGCTGTCCGTGGCTTTATAGCTAACCAAAAAAGCATGAACATGAGAAATAAGATTTCTCTGACTAACCGCATGGGGAGAAAATACCCTGGTGACATAAATATAACAGATAGTCTCCAAAAAAAAAAAAAAATGCCCTATTGTTCCAGACTCCCTCAAAACGGTATTGTCAAGGGACGCTGGCTAAAGCATAATACATACTGCCACACAAATCCATTATTTAAACAGCTGACAATGTGATGGTCAATGAACAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180021 True 282 lncRNA 0.38 1 2426494 2426775

Neighbor

gene id symbol gene type direction distance location
CI01000030_02423347_02426071 NA coding upstream 193 2422768 ~ 2426301 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding upstream 134066 2289500 ~ 2292428 (+)
CI01000030_02277208_02282376 TM6SF2 coding upstream 143751 2277208 ~ 2282743 (+)
CI01000030_02260437_02262817 NA coding upstream 163677 2260380 ~ 2262817 (+)
CI01000030_02256592_02257308 NA coding upstream 168905 2256530 ~ 2257589 (+)
CI01000030_02452403_02456555 NR2C2AP coding downstream 25628 2452403 ~ 2456871 (+)
CI01000030_02466855_02469633 NA coding downstream 39810 2466585 ~ 2470573 (+)
CI01000030_02472528_02477483 NA coding downstream 45753 2472528 ~ 2477483 (+)
CI01000030_02531026_02532411 NA coding downstream 103734 2530509 ~ 2534232 (+)
CI01000030_02573116_02582804 GATAD2A coding downstream 146341 2573116 ~ 2582812 (+)
G158508 NA non-coding upstream 114024 2304497 ~ 2312470 (+)
G158490 NA non-coding upstream 164651 2261553 ~ 2261843 (+)
G158488 NA non-coding upstream 167040 2259229 ~ 2259454 (+)
G158487 NA non-coding upstream 167990 2258226 ~ 2258504 (+)
G158555 NA non-coding downstream 20234 2447009 ~ 2447452 (+)
G158436 NA non-coding downstream 225869 2652644 ~ 2653106 (+)
G158434 NA non-coding downstream 228500 2655275 ~ 2655548 (+)
G158566 NA non-coding downstream 230198 2656973 ~ 2657187 (+)
G157726 NA other upstream 788267 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1419807 1003114 ~ 1003795 (+)
G157227 NA other upstream 2070011 327649 ~ 356483 (+)
G157108 NA other upstream 2279641 116156 ~ 146853 (+)
G158416 NA other downstream 169101 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 586681 3018776 ~ 3043773 (+)
G159685 NA other downstream 2005025 4431800 ~ 4488526 (+)
G159816 NA other downstream 2090003 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4773160 7200104 ~ 7202485 (+)

Expression


Co-expression Network