Gene
RNA
| Item | Value |
|---|---|
| gene id | G158434 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 2655275 ~ 2655548 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: actin, alpha cardiac-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU179904 | True | 274 | lncRNA | 0.49 | 1 | 2655275 | 2655548 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_02641511_02650047 | CILP2 | coding | upstream | 4736 | 2641045 ~ 2650539 (+) |
| CI01000030_02620111_02632697 | YJEFN3 | coding | upstream | 22553 | 2620111 ~ 2632722 (+) |
| CI01000030_02573116_02582804 | GATAD2A | coding | upstream | 72463 | 2573116 ~ 2582812 (+) |
| CI01000030_02531026_02532411 | NA | coding | upstream | 121043 | 2530509 ~ 2534232 (+) |
| CI01000030_02472528_02477483 | NA | coding | upstream | 177792 | 2472528 ~ 2477483 (+) |
| CI01000030_02678940_02684491 | NA | coding | downstream | 23392 | 2678940 ~ 2684591 (+) |
| CI01000030_02705058_02731134 | NA | coding | downstream | 46263 | 2701811 ~ 2731151 (+) |
| CI01000030_02843446_02856037 | CBARPB | coding | downstream | 187898 | 2843446 ~ 2856216 (+) |
| CI01000030_02891265_02897170 | FSTL3 | coding | downstream | 235563 | 2891111 ~ 2898442 (+) |
| CI01000030_02911153_02916952 | NA | coding | downstream | 253852 | 2909400 ~ 2916952 (+) |
| G158436 | NA | non-coding | upstream | 2169 | 2652644 ~ 2653106 (+) |
| G158555 | NA | non-coding | upstream | 207823 | 2447009 ~ 2447452 (+) |
| G158548 | NA | non-coding | upstream | 228500 | 2426494 ~ 2426775 (+) |
| CI01000030_02423347_02426071 | NA | non-coding | upstream | 230200 | 2422768 ~ 2426301 (+) |
| G158566 | NA | non-coding | downstream | 1425 | 2656973 ~ 2657187 (+) |
| G158567 | NA | non-coding | downstream | 2714 | 2658262 ~ 2658521 (+) |
| G158398 | NA | non-coding | downstream | 31995 | 2687543 ~ 2690341 (+) |
| G158585 | NA | non-coding | downstream | 51400 | 2706948 ~ 2707161 (+) |
| G158416 | NA | other | upstream | 40982 | 2595876 ~ 2614293 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | upstream | 372905 | 2277208 ~ 2282743 (+) |
| G157726 | NA | other | upstream | 1017048 | 1636867 ~ 1638227 (+) |
| CI01000030_01003310_01003776 | NA | other | upstream | 1648588 | 1003114 ~ 1003795 (+) |
| G157227 | NA | other | upstream | 2298792 | 327649 ~ 356483 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | downstream | 357908 | 3018776 ~ 3043773 (+) |
| G159685 | NA | other | downstream | 1776252 | 4431800 ~ 4488526 (+) |
| G159816 | NA | other | downstream | 1861230 | 4516778 ~ 4517381 (+) |
| CI01000030_07200104_07202258 | GCGA | other | downstream | 4544387 | 7200104 ~ 7202485 (+) |
| CI01000030_07868597_07886123 | NA | other | downstream | 5198537 | 7868292 ~ 7886228 (+) |
