XLOC_008880 (tagln)


Basic Information

Item Value
gene id XLOC_008880
gene name tagln
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 543744 ~ 551181 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017543
AGAGGGTCCGCCGTGCTGAACATAAAGCTGCTgaatctgaacacacacactcctgctgaCTCCGGGACCGACTGCGGCATCGCTCTCTACTACAGGAGCGACTATGGCAAACAAGGGGCCGTCTTATGGGCTGAGCCGGCAGGTGCAGGATAAGATCGAGCAGAAGTACGACCCGGAGCTGGAGCTGCGTCTGGTGGAGTGGCTCGTGGCCCAGTGTGGGTCAGCGGTGGGGAGACCCGACGCCGGGAAACTGGGCTTTCAAGCCTGGCTTAAAGACGGATGCGTGTTGTGCGAGCTGATCAACAGTCTGAGTAAAGAGAAGCCGGTGAAGAAGATCCAGAGCTCCAGCATGGCCTTTAAGCAGATGGAGCAGGTCTCGCAGTTCCTGAACGCCGCCGAGCAGTACGGCGTGGCCAAAACCGACATATTTCAGACGGTGGATCTGTGGGAGGGAAAAGACCTGGCAGCGGTGCAGAGGACTCTGATGGCTCTGGGCAGCATCGCAGTCACCAAAGAGGACGGAGCTTTCCGTGGAGACCCAAACTGGTTCTTCAAGAAAGCGCAGGAGAACCGCAGGGATTTCTCAGACGATCAGATGAAGGAGGGCAAGAACGTGATCGGGCTGCAGATGGGCTCCAACAGAGGGGCGTCTCAGGCGGGCATGACGGGGTACGGGCGCCCGCGGCAGATCATGAACccctgaacacacactcacatcagcACACCACCACAACCACTGCCTAATAAAGATTCAAAACACTGACGCCCGTCAA
>TCONS_00017544
CTCGAGAGGGTCCGCCGTGCTGAACATAAAGCTGCTgaatctgaacacacacactcctgctgaCTCCGGGACCGACTGCGGCATCGCTCTCTACTACAGTTGGAGGATCAGAGGTGGTGTCCTAAAGCAGAATGGCAGCACAGGGAGCGACTATGGCAAACAAGGGGCCGTCTTATGGGCTGAGCCGGCAGGTGCAGGATAAGATCGAGCAGAAGTACGACCCGGAGCTGGAGCTGCGTCTGGTGGAGTGGCTCGTGGCCCAGTGTGGGTCAGCGGTGGGGAGACCCGACGCCGGGAAACTGGGCTTTCAAGCCTGGCTTAAAGACGGATGCGTGTTGTGCGAGCTGATCAACAGTCTGAGTAAAGAGAAGCCGGTGAAGAAGATCCAGAGCTCCAGCATGGCCTTTAAGCAGATGGAGCAGGTCTCGCAGTTCCTGAACGCCGCCGAGCAGTACGGCGTGGCCAAAACCGACATATTTCAGACGGTGGATCTGTGGGAGGGAAAAGACCTGGCAGCGGTGCAGAGGACTCTGATGGCTCTGGGCAGCATCGCAGTCACCAAAGAGGACGGAGCTTTCCGTGGAGACCCAAACTGGTTCTTCAAGAAAGCGCAGGAGAACCGCAGGGATTTCTCAGACGATCAGATGAAGGAGGGCAAGAACGTGATCGGGCTGCAGATGGGCTCCAACAGAGGGGCGTCTCAGGCGGGCATGACGGGGTACGGGCGCCCGCGGCAGATCATGAACccctgaacacacactcacatcagcACACCACCACAACCACTGCCTAATAAAGATTCAAAACACTGACGCCCGTC

Function

symbol description
tagln Predicted to be active in cytoskeleton. Is expressed in several structures, including artery; gut; hematopoietic stem cell; smooth muscle; and swim bladder bud. Orthologous to human TAGLN (transgelin).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-070912-1 Predicted to be active in cytoskeleton. Is expressed in several structures, including artery; gut; hematopoietic stem cell; smooth muscle; and swim bladder bud. Orthologous to human TAGLN (transgelin).

Ensembl:

ensembl_id ENSDARG00000045408

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017543 False 773 mRNA 0.58 5 543744 551177
TCONS_00017544 True 820 mRNA 0.58 6 543746 551181

Neighbor

gene id symbol gene type direction distance location
XLOC_008879 nudt8 coding downstream 37734 499848 ~ 506010 (-)
XLOC_008878 mfrp coding downstream 66521 464229 ~ 477223 (-)
XLOC_008877 CABZ01033205.1 coding downstream 80961 454349 ~ 462783 (-)
XLOC_008876 CABZ01033206.1 coding downstream 91397 449097 ~ 452347 (-)
XLOC_008875 CABZ01056629.1 coding downstream 107214 433035 ~ 436530 (-)
XLOC_008881 cbln18 coding upstream 5775 556956 ~ 568645 (-)
XLOC_008882 cbln20 coding upstream 21014 572195 ~ 576135 (-)
XLOC_008883 si:ch73-144d13.5 coding upstream 35424 586605 ~ 604353 (-)
XLOC_008884 si:ch73-144d13.7 coding upstream 60048 611229 ~ 617797 (-)
XLOC_008885 NA coding upstream 71528 622709 ~ 633408 (-)
XLOC_008874 NA non-coding downstream 114097 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 117988 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 165557 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 194177 349451 ~ 349567 (-)
XLOC_008869 BX640522.2 non-coding downstream 253237 282731 ~ 290507 (-)
XLOC_008893 NA non-coding upstream 261915 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 267010 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 285834 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 318780 869961 ~ 909037 (-)

Expression


Co-expression Network