G158766


Basic Information

Item Value
gene id G158766
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3211783 ~ 3212301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU180258
AAAACTGAACAGCAAAGTGTAGTGAATGATCTTTCGGTGACAGAGGTGACAAACTTCACCACCTGCCAGACGATGTTGCAAAAACTGGAAGATCCACTCCCAGACAATGTCCTGTGCTCTTGGGGTTTCAAGAAAAAAAAAAAAGAAAAAAAAAAAAAAAGTGGTGCTTGTTAGGGCAATTCGGGTGGACTGCTAGTGTGCAATGGGGAAGCGGTGGGCATCGTCTCTGTGGAACTCATGACAACCAAAATGCTTTCAATATTTACACTCAAATTTCAAAATACACAGTATGGATTAAGAATGTGATCAATGGAAGTTCCTGATGACTTTAAAACTGAATTTTATTGTCACCTTTTATGGTGACATGAATGCTACACGTAAAAAAAATTAAATAAAAGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU180258 True 401 lncRNA 0.38 2 3211783 3212301

Neighbor

gene id symbol gene type direction distance location
CI01000030_03202618_03204279 NA coding upstream 6723 3202573 ~ 3205060 (+)
CI01000030_03196185_03200757 NA coding upstream 10978 3195548 ~ 3200805 (+)
CI01000030_03185116_03188245 NA coding upstream 23471 3185071 ~ 3188312 (+)
CI01000030_03172301_03180142 NA coding upstream 31247 3172255 ~ 3180536 (+)
CI01000030_03157804_03158397 NA coding upstream 52456 3157633 ~ 3159327 (+)
CI01000030_03218927_03220573 HSD11B1LA coding downstream 6626 3218927 ~ 3221005 (+)
CI01000030_03229393_03232355 NA coding downstream 16980 3229281 ~ 3232454 (+)
CI01000030_03238201_03242662 NA coding downstream 25691 3237992 ~ 3242902 (+)
CI01000030_03253246_03261669 RGMD coding downstream 40945 3253246 ~ 3261943 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding downstream 353484 3565785 ~ 3570730 (+)
G158774 NA non-coding upstream 4497 3206998 ~ 3207286 (+)
G158767 NA non-coding upstream 48311 3163243 ~ 3163472 (+)
CI01000030_03139836_03149991 NA non-coding upstream 61773 3139836 ~ 3150010 (+)
G158681 NA non-coding upstream 241553 2968657 ~ 2970230 (+)
G159234 NA non-coding downstream 29195 3241496 ~ 3241775 (+)
G159261 NA non-coding downstream 104660 3316961 ~ 3317302 (+)
G159417 NA non-coding downstream 318496 3530797 ~ 3531025 (+)
G159418 NA non-coding downstream 319033 3531334 ~ 3531604 (+)
CI01000030_03018776_03042194 FGF22 other upstream 168010 3018776 ~ 3043773 (+)
G158416 NA other upstream 597490 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 929413 2277208 ~ 2282743 (+)
G157726 NA other upstream 1573556 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2205096 1003114 ~ 1003795 (+)
G159685 NA other downstream 1219499 4431800 ~ 4488526 (+)
G159816 NA other downstream 1304477 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3987634 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4641784 7868292 ~ 7886228 (+)
G162088 NA other downstream 5025664 8237965 ~ 8239604 (+)

Expression


Co-expression Network