G159433


Basic Information

Item Value
gene id G159433
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3545393 ~ 3547030 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181002
TTGGGGGAAAATCCTTAAGCAGTGCTACGAATGTACAGCAAAGCAAACAGGTGAATGGGTCCAGAATTTCCCAGTGGTTCTGATGACCAGAGGAGCATGTGAAAACAGTTGCGCATCAAAAGGTACAGAGGAAGTTAGAGGAGAAAGACAAACGCGCAAGTGTTTCTGAATGAGAGGAAGGGAAAGTGGGGCAGCTCCCAAAGGACGTTTCTCACGCCTGCTTCGTCCTGTCAATCAAAAGCAAATATGAATGTGAAGGATCTGCTTTTCCCTGAACAGCGTCAAACATCCATCTGCACGAGAACCAGTACAGGAGGCGCCTCGGCCACCTTTGCCTTGCGGGGGAGCAGTCGAGCAAGGCTTCGGTAGGACGGCGTGGCCCTCAGCAACAGCTCTTTGAGTCCGGCGCGGAATTCGTGGCGGATCAGACAATAGAGCACCGGGTTCAGGCAGCTGTTTGTGTGGGCCAAGCACACAGTCAGCGGGAAAGCGTACGCCTGGGCATTGTAGAAGGCCTTGCTGAAGGGCACCAGGTCGAACTTAATGAGGACGCCCCACAGAGTCAGGGCCTGATTGGGAAGCCAACACAAGAAGAACGACAGGACGACGATCACAACAGACTTAGTGACCTTTGAGCGCCGCTTGTGCCTGCCCTGCTCACTTTCGGAGCCAGCCACACCGCTGATCCTGCGGCTTAGCACGATTCTTAGAAGTAGTAGATAGCATACGGTGATCACCACCAGTGGGATCAGAAAACCAAGCAGGACCTTTTGCAACTGGTACAGTCCTAGCAACAACTGGGGGTCCCAGCTTCCCGTTTCTGGGAAGCGCACCAAGCACAGCTCCTCGTCCGTTGCAACCTGGGCTATCGTGGAATAAACGGCATGCGGGAGTGTCGCTATCAGGGATACGACCCAGATGCCCAAGCTGATCCATTTGGCCACAGCCGCCGCAGCTCTGCGGCTGTGCATCTTCAACGAGGACGCGATAGAGTAGTACCTGGCCACACTCATGGCGGTCAGGAAATAAACGCTGGCGTACATGTTCATAGTGGTGACGGAGCTGATGATTTTGCACATAACTTTGCCGAAGGGCCAGCGGAAGTCCAGCGCCGTGTCTACGGCCCAGAACGGGAGAGTTAGGACAAACTGCAGGTCGGTTAGAGCCAAACCCATCACAAAGCAGTTGATGGAAGACTGCTTCTGCCGGTAGCGTGAGTGTAGCAGGTAGAGCGCGAGAGAGTTGCCTACAAGTCCCAGAGCGCATACCACTGAATAAATGAGAGCGATCATCACACGCACAGCCAAACTAGACCCATCACCTTGAAGTGTTGAACTAGACTCCTTTGTCAACAATTGCAACCAGCAGCGTAAAGACAGGTTCCCGCTGGCAGAGTCTGTGCAGTTGTCCAGAGCTGCGCTGGTGTCCAGTGTGTGCTCACATTCTCCCAGCTCCAGAGTTTGTGTGGTGTTATTCCTCTCCATGGCAGACTTCCACTCAGTCCGTTGTCATGGTGAAATGATACAAATGTAGAAACGAATCCATTTATCTAATTTATCTCAAGTTCATTGTGACCACCGCACTTTGTTTCCGGGCATGTATAATTAGTTCACCGGCAGCGAGAGCGCGGTCTCATCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU181002 True 1638 lncRNA 0.53 1 3545393 3547030

Neighbor

gene id symbol gene type direction distance location
CI01000030_03253246_03261669 RGMD coding upstream 283450 3253246 ~ 3261943 (+)
CI01000030_03238201_03242662 NA coding upstream 302491 3237992 ~ 3242902 (+)
CI01000030_03229393_03232355 NA coding upstream 312939 3229281 ~ 3232454 (+)
CI01000030_03218927_03220573 HSD11B1LA coding upstream 324388 3218927 ~ 3221005 (+)
CI01000030_03202618_03204279 NA coding upstream 340333 3202573 ~ 3205060 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding downstream 18755 3565785 ~ 3570730 (+)
CI01000030_03580764_03584676 HMG20B coding downstream 33734 3580764 ~ 3585255 (+)
CI01000030_03594936_03629403 UNC13A coding downstream 47906 3594936 ~ 3629485 (+)
CI01000030_03703231_03704355 NA coding downstream 155143 3701601 ~ 3704615 (+)
CI01000030_03715463_03716370 NA coding downstream 167581 3714611 ~ 3717569 (+)
G159420 NA non-coding upstream 12125 3532793 ~ 3533268 (+)
G159418 NA non-coding upstream 13789 3531334 ~ 3531604 (+)
G159417 NA non-coding upstream 14368 3530797 ~ 3531025 (+)
G159261 NA non-coding upstream 228091 3316961 ~ 3317302 (+)
G159434 NA non-coding downstream 490 3547520 ~ 3547738 (+)
G159437 NA non-coding downstream 14486 3561516 ~ 3562293 (+)
G159452 NA non-coding downstream 96960 3643990 ~ 3644461 (+)
G159453 NA non-coding downstream 97949 3644979 ~ 3645233 (+)
G159458 NA non-coding downstream 143019 3690049 ~ 3690431 (+)
CI01000030_03018776_03042194 FGF22 other upstream 501620 3018776 ~ 3043773 (+)
G158416 NA other upstream 931100 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1263023 2277208 ~ 2282743 (+)
G157726 NA other upstream 1907166 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2538706 1003114 ~ 1003795 (+)
G159685 NA other downstream 884770 4431800 ~ 4488526 (+)
G159816 NA other downstream 969748 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3652905 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4307055 7868292 ~ 7886228 (+)
G162088 NA other downstream 4690935 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021096 rxfp3.2b coding NC_007133.7 CM002906.2 20104706 ~ 20105969 (-)