G159437


Basic Information

Item Value
gene id G159437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3561516 ~ 3562293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181006
GACCGTGAACAGCAACAGAAGTTACATTATTACGCCATTAGATGGCAGCAAAGACTGTCTTTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGACGCAACTGACAAATGCTTTGACTAGTGCTGTCAGTCACGGGAAAACCCCTTAATTGTTAAAAGGACAAGATAATACATGGACATTTAAACAGATTTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCACTCGATCTTTTCCTCACAATACTCTTCTACATAACACAGTAAGCTTCAATGAACAATATCAATTGAGAACATATAGTTTACGTTGTTAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACACAGAACCGTTGGGTGAAGCGGTCATAGCTGTGTTTTATCGTGAATAAAACACAGCTATTGACCAATCAGAATCAAAGACAGGAACTAACCGTTTTATAATAAACATTAACAACACAGGATGTAACATAAAACCCTAATGTACATAACTGATAAGAAAAAGCTTATTTCAGTGAAATACCACCAAATGTGAGCTGTCACACAGCGAATTCTGGGAATGTCAATTTATGGTTTTTCACTGTAAATAATAAGATAACTTGTTCTTTTTCACTTCCAAAAACAATTTTACTGTAAAATTACATGAAATATCCCAGTAGATCTATTACAGTCTTTCACTGTATAAAGGAACCTACCATTAGGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181006 True 778 lncRNA 0.36 1 3561516 3562293

Neighbor

gene id symbol gene type direction distance location
CI01000030_03253246_03261669 RGMD coding upstream 299573 3253246 ~ 3261943 (+)
CI01000030_03238201_03242662 NA coding upstream 318614 3237992 ~ 3242902 (+)
CI01000030_03229393_03232355 NA coding upstream 329062 3229281 ~ 3232454 (+)
CI01000030_03218927_03220573 HSD11B1LA coding upstream 340511 3218927 ~ 3221005 (+)
CI01000030_03202618_03204279 NA coding upstream 356456 3202573 ~ 3205060 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding downstream 3492 3565785 ~ 3570730 (+)
CI01000030_03580764_03584676 HMG20B coding downstream 18471 3580764 ~ 3585255 (+)
CI01000030_03594936_03629403 UNC13A coding downstream 32643 3594936 ~ 3629485 (+)
CI01000030_03703231_03704355 NA coding downstream 139880 3701601 ~ 3704615 (+)
CI01000030_03715463_03716370 NA coding downstream 152318 3714611 ~ 3717569 (+)
G159434 NA non-coding upstream 13778 3547520 ~ 3547738 (+)
G159433 NA non-coding upstream 14486 3545393 ~ 3547030 (+)
G159420 NA non-coding upstream 28248 3532793 ~ 3533268 (+)
G159418 NA non-coding upstream 29912 3531334 ~ 3531604 (+)
G159417 NA non-coding upstream 30491 3530797 ~ 3531025 (+)
G159452 NA non-coding downstream 81697 3643990 ~ 3644461 (+)
G159453 NA non-coding downstream 82686 3644979 ~ 3645233 (+)
G159458 NA non-coding downstream 127756 3690049 ~ 3690431 (+)
G159459 NA non-coding downstream 128939 3691232 ~ 3691471 (+)
G159460 NA non-coding downstream 129540 3691833 ~ 3692126 (+)
CI01000030_03018776_03042194 FGF22 other upstream 517743 3018776 ~ 3043773 (+)
G158416 NA other upstream 947223 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1279146 2277208 ~ 2282743 (+)
G157726 NA other upstream 1923289 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2554829 1003114 ~ 1003795 (+)
G159685 NA other downstream 869507 4431800 ~ 4488526 (+)
G159816 NA other downstream 954485 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3637642 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4291792 7868292 ~ 7886228 (+)
G162088 NA other downstream 4675672 8237965 ~ 8239604 (+)

Expression


Co-expression Network