G159452


Basic Information

Item Value
gene id G159452
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3643990 ~ 3644461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181022
AAAAACAACTCTTGATTTCTCCAACAAGTAGGTCCTCATGTTTGCCCCAATTATATCCCCTTTACGACCAAATCCTATCTCAATATACTTCCCAAAACGGCTGCTGTTGTCGTTTCTGGTTGTTTTTGCATTACCGATTGCCTGTAAGGATTAAAGTAATAGAAATTAATTGAATTATTAATAAACAGCTTCCTCCTGCTTTACCAAAAAGGCCATAAATCAAGTTTTAGTACCTCCATGATGGGATTGGATGCCAAAACTTTCTCCTCCACACTGGTCTGCTGGGCCGCACCCCCCACAACAGCAAAGTAACGCATGGTGTACTTAGCAGATACAGTTTTACCTGAGCCTGATTCTCCACTGATTATGATGGATTGGTTTTTCTCCTCTCTGTATATATAATTATGATTAAAACCATATGTTTTGGTTAAAGTAATGTAATACCAATTCAGAATGAAAGTTTATATTGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181022 True 472 lncRNA 0.37 1 3643990 3644461

Neighbor

gene id symbol gene type direction distance location
CI01000030_03594936_03629403 UNC13A coding upstream 14505 3594936 ~ 3629485 (+)
CI01000030_03580764_03584676 HMG20B coding upstream 58735 3580764 ~ 3585255 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding upstream 73260 3565785 ~ 3570730 (+)
CI01000030_03253246_03261669 RGMD coding upstream 382047 3253246 ~ 3261943 (+)
CI01000030_03238201_03242662 NA coding upstream 401088 3237992 ~ 3242902 (+)
CI01000030_03703231_03704355 NA coding downstream 57712 3701601 ~ 3704615 (+)
CI01000030_03715463_03716370 NA coding downstream 70150 3714611 ~ 3717569 (+)
CI01000030_03744173_03745628 FOXQ2 coding downstream 99030 3743491 ~ 3745741 (+)
CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding downstream 120601 3765062 ~ 3779032 (+)
CI01000030_03825765_03826754 NA coding downstream 180954 3825415 ~ 3826794 (+)
G159437 NA non-coding upstream 81697 3561516 ~ 3562293 (+)
G159434 NA non-coding upstream 96252 3547520 ~ 3547738 (+)
G159433 NA non-coding upstream 96960 3545393 ~ 3547030 (+)
G159420 NA non-coding upstream 110722 3532793 ~ 3533268 (+)
G159418 NA non-coding upstream 112386 3531334 ~ 3531604 (+)
G159453 NA non-coding downstream 518 3644979 ~ 3645233 (+)
G159458 NA non-coding downstream 45588 3690049 ~ 3690431 (+)
G159459 NA non-coding downstream 46771 3691232 ~ 3691471 (+)
G159460 NA non-coding downstream 47372 3691833 ~ 3692126 (+)
G159461 NA non-coding downstream 47917 3692378 ~ 3692627 (+)
CI01000030_03018776_03042194 FGF22 other upstream 600217 3018776 ~ 3043773 (+)
G158416 NA other upstream 1029697 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1361620 2277208 ~ 2282743 (+)
G157726 NA other upstream 2005763 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2637303 1003114 ~ 1003795 (+)
G159685 NA other downstream 787339 4431800 ~ 4488526 (+)
G159816 NA other downstream 872317 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3555474 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4209624 7868292 ~ 7886228 (+)
G162088 NA other downstream 4593504 8237965 ~ 8239604 (+)

Expression


Co-expression Network