Gene
RNA
| Item | Value |
|---|---|
| gene id | G159461 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 3692378 ~ 3692627 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: cubilin |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU181031 | True | 250 | lncRNA | 0.39 | 1 | 3692378 | 3692627 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_03594936_03629403 | UNC13A | coding | upstream | 62893 | 3594936 ~ 3629485 (+) |
| CI01000030_03580764_03584676 | HMG20B | coding | upstream | 107123 | 3580764 ~ 3585255 (+) |
| CI01000030_03565934_03569916 | EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 | coding | upstream | 121648 | 3565785 ~ 3570730 (+) |
| CI01000030_03253246_03261669 | RGMD | coding | upstream | 430435 | 3253246 ~ 3261943 (+) |
| CI01000030_03238201_03242662 | NA | coding | upstream | 449476 | 3237992 ~ 3242902 (+) |
| CI01000030_03703231_03704355 | NA | coding | downstream | 9546 | 3701601 ~ 3704615 (+) |
| CI01000030_03715463_03716370 | NA | coding | downstream | 21984 | 3714611 ~ 3717569 (+) |
| CI01000030_03744173_03745628 | FOXQ2 | coding | downstream | 50864 | 3743491 ~ 3745741 (+) |
| CI01000030_03765594_03778884 | ONECUT3, ONECUT3A | coding | downstream | 72435 | 3765062 ~ 3779032 (+) |
| CI01000030_03825765_03826754 | NA | coding | downstream | 132788 | 3825415 ~ 3826794 (+) |
| G159460 | NA | non-coding | upstream | 252 | 3691833 ~ 3692126 (+) |
| G159459 | NA | non-coding | upstream | 907 | 3691232 ~ 3691471 (+) |
| G159458 | NA | non-coding | upstream | 1947 | 3690049 ~ 3690431 (+) |
| G159453 | NA | non-coding | upstream | 47145 | 3644979 ~ 3645233 (+) |
| G159452 | NA | non-coding | upstream | 47917 | 3643990 ~ 3644461 (+) |
| G159464 | NA | non-coding | downstream | 2028 | 3694655 ~ 3694895 (+) |
| G159465 | NA | non-coding | downstream | 2329 | 3694956 ~ 3695289 (+) |
| G159483 | NA | non-coding | downstream | 70421 | 3763048 ~ 3763283 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | upstream | 648605 | 3018776 ~ 3043773 (+) |
| G158416 | NA | other | upstream | 1078085 | 2595876 ~ 2614293 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | upstream | 1410008 | 2277208 ~ 2282743 (+) |
| G157726 | NA | other | upstream | 2054151 | 1636867 ~ 1638227 (+) |
| CI01000030_01003310_01003776 | NA | other | upstream | 2685691 | 1003114 ~ 1003795 (+) |
| G159685 | NA | other | downstream | 739173 | 4431800 ~ 4488526 (+) |
| G159816 | NA | other | downstream | 824151 | 4516778 ~ 4517381 (+) |
| CI01000030_07200104_07202258 | GCGA | other | downstream | 3507308 | 7200104 ~ 7202485 (+) |
| CI01000030_07868597_07886123 | NA | other | downstream | 4161458 | 7868292 ~ 7886228 (+) |
| G162088 | NA | other | downstream | 4545338 | 8237965 ~ 8239604 (+) |
