XLOC_008886 (si:ch211-210b2.4)


Basic Information

Item Value
gene id XLOC_008886
gene name si:ch211-210b2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 647854 ~ 660394 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017555
aggaCTGAAAATCTACTGGTCTCATATTCACTGCATACACAAACTCTGGTCGAACCAGCTCAGTTGTTAGATCCTGTAATCTGACTAATCCAACAGAGTTTGTTTGGAATTGACTTACTGAAATCAACTAATACATCATGGCTCATGAACAGGACTACCACACTCTAATGTCTGGACTGCAAGAGCTTAATTTTGAAGGGAATCCAGTCCCCTGTCATTTAATACTAATAGGTGAACATTCTTTTCCCCTTGCCATGAATTCACGTGGTCAGGTACTGATAGCTGCATCTCATTATGGTCAGGGACGTGTGGTGGTGTTGGGACATGAAAATTACTTAAGACGCTTTCCTGGCCTGATAATGAATGCCTTGACATGGCTCAGGCCAGATACCCGAGATGCCGGGGTTGTAGGGATTCAGAGTCGTTTACATGCAGTAGCTGAAAACTTGAACCACTGCAATATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTATATATATCACAGATGCTTACAGTGTTGAGACATGTGCAAAGGATCTGGTAGCTTTTCTCAAAGCTGGGGGTGGTTTAATCATTGCTGGACAAGCCTGGCATTGGTCTCACAAACACCCACAAGAAAACATTTTGAGGAACTTTCCAGGTAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCAGACCGTAGAAGTCAGCACCTTTCCTGTTCCTGGAAATATCCCTTCTAGTTGGCGAGCTTGGTCAAAACCCAATAACTTTAAAAAGGATCTAGAGTTCTTGCTGGAAGATGTGTCCGAGTTTGACACTCGGGGTAATGCTGTAGCATCTGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATCGCTCTCACTCCAGATGGAAAACCATTTGTTGCTGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAAAACTATGTCCACTTTCATGATCAATGCCATCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGGCTTAAAGCAGCCCATGAGGTACTGGCCAAATCTGGCTTAGATTGTAAGCTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCCTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGAGGAGGACTTCTGATTGGGGGTCATGCTTGGAATTGGGCCCAGACCCACCGAGGCTCCAATGTGATGACTGATAACCCAGGAAACCGCATTCTTAACAAGATGGGATTGAGTCTATTGGAAAATACCTTGAGTGGAGGGTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTACCACTTTTTGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGGCAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAAAGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGATGTAGTGAAGATGCCAAGTTTTCCACAAGTGAGTAGTACCTGTGCTGTGGAAAGTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGACCTTCTTCCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGGTTGTGAAGAATGGATCAGCACTGGCTTATATCTTTCTCCTGGAATGAAGACATACATCACAATACCTCCAGAGATCATTGAAAAAAAATGGCAgGTACAGCTTGGTTGTCAGACAGATGACATTGGTAGATTAAAGATTCTGAAGCGAGCTCCTGTGGTCCATGAGCAATTCCCCTTGGACTCAGAAAAGGTCCAGGTCTGTAATCTGTGGGGAGGACTCATCTACTTCGTAGCACCTCCTAAAAGCAAAGTGGATGGGGTGGAAATTGTTGTGCAGACCGCAGTACAGGCTCCATACTTCAAGTCTGGAGAGACCAGTGTAGCTGACTGGGTGGGCAAGATTCGTCAGAGACCTGCTCCCTGGGCAGAACTTGAGTTTGAAAACCTCGTCATGACCTTGCCCTCAGATTTAATTCGGAATCTGGAGCGCCCTGATGAGGTGGCTGAACTTTGGGATGCCATAATGAGAAGCGTAAGTGACTTGGCAGCAACTCCAGCCAAATTCCCCCGCAAGGAGCGATTTGTTGGAGATGTTCAGATCTCTGCTGGCTTCATGCATTCTGGATATCCCATAATGATGCTCTCCAGTTCTGCTTCACAACTACTAAATGTGAAGGAAGCCCATAAACATGATTTCTGGGGACCACTTCACGAGTTGGGCCATAACCAGCAGCGTAAGGTTTGGGAGTTTCCTCCACACACTACTGAGTGCACCTGCAACCTGTGGTCAGTGTACGTCCATGAGAAAGTGCTGGGTGTGAATAGGGCTAAAGCTCATCCATGCATGACTCTAGAAAGCCGGCAGGCTTGTATCAAGAAGTATTTCAGTGGTGGAAAGGATTTAAAAAACTGGACTAAGGCCACAGCACTCGAGACTTACATGCAGCTTCAGGAGAAATTCGGCTGGGATGCCTTCAAGAAAGTATTTTCTCTCTACCATGATATGAAAGATGTCCCAAATGACAACGCAGGCAAGATGAATCTATATGCCAAGACCTTCTCCAAGGTGGTCAACCACAACTTGTCTCCATTCTTCAAAACATGGGGTTGGCCCATCCAGCCCAACACAGAACAGGAGCTGTCCCATCTGCCAGCATGGAGAGACCATCCTGTTAGCCAGTATGCATAAGAACATGTTGGATAGCAATGAATAATGCACACAGTTGTATATAAAATATCACCTGCAGAATGCTTATATGGAGTTTCTTggacattattgatttaatataatttgtatttgatTAGTGAGGGTGAGGCGCTGGAATGTGATTTAAAAGCACTTGATATTAATCAAATGTG
>TCONS_00017556
ttttttttttttttacattagaaatGTCAGTCTTGCAACTTAAATTGTGAATTACATGATCAAATTATTTCTGAATATATGCAACTTTTTtctttcctgttttgtgtaggaCTGAAAATCTACTGGTCTCATATTCACTGCATACACAAACTCTGGTCGAACCAGCTCAGTTGTTAGATCCTGTAATCTGACTAATCCAACAGAGTTTGTTTGGAATTGACTTACTGAAATCAACTAATACATCATGGCTCATGAACAGGACTACCACACTCTAATGTCTGGACTGCAAGAGCTTAATTTTGAAGGGAATCCAGTCCCCTGTAATCTAATACTAATAGGTGAACATTCCTTTCCCCTTTTCATTAATCCATGTGGTCAGGTACTGATGGCTGCATCTCATTATGGTCAGGGACGTGTGGTGGTGTTGGGACATGAAAATTACTTAAGACGCTTTCCTGGCCTGATAATGAATGCCTTGACATGGCTCAGGCCAGATACCCGAGATGCCGGGGTTGTAGGGATTCAGAGTCGTTTACATGCAGTAGCTGAAAACTTGAACCACTGCAATATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTGTATATATCACAGATTCTTACAGTGTTGAGACATGTGCAAAGGATCTGATAGCTTTTCTCAAAGCTGGGGGTGGTTTAATCATTGCTGGACAAGCCTGGCACTGGTCTTATGGACACCCACAAGAAAACATTTTGAGGAACTTTCCAGGTAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCAGACCGGAGAAGTCGGCACCTTTCCTGTTCCTGGAAATATCCCTTCTAGTTGGCGAGCTTGGTCAAAACCCAATAACTTTAAAAAGGATCTAGAGTTCTTGCTGGAAGATGTGTCCGAGTTTGACACTCGGGGTAATGCTGTAGCATCTGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATCGCTCTCACTCCAGATGGAAAACCATTTGTTGCTGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAAAACTATGTCCACTTTCATGATCAATGCCATCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGGCTTAAAGCAGCCCATGAGGTACTGGCCAAATCTGGCTTAGATTGTAAGCTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCCTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGAGGAGGACTTCTGATTGGGGGTCATGCTTGGAATTGGGCCCAGACCCACCGAGGCTCCAATGTGATGACTGATAACCCAGGAAACCGCATTCTTAACAAGATGGGATTGAGTCTATTGGAAAATACCTTGAGTGGAGGGTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTACCACTTTTTGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGGCAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAAAGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGATGTAGTGAAGATGCCAAGTTTTCCACAAGTGAGTAGTACCTGTGCTGTGGAAAGTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGACCTTCTTCCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGGTACTAAAATTGCTCCGGTACTGAGGTGGTTATGGTGA
>TCONS_00017557
gtaggaCTGAAAATCTACTGGTCTCATATTCACTGCATACACAAACTCTGGTCGAACCAGCTCAGTTGTTAGATCCTGTAATCTGACTAATCCAACAGAGTTTGTTTGGAATTGACTTACTGAAATCAACTAATACATCATGGCTCATGAACAGGACTACCACACTCTAATGTCTGGACTGCAAGAGCTTAATTTTGAAGGGAATCCAGTCCCCTGTAATCTAATACTAATAGGTGAACATTCCTTTCCCCTTTTCATTAATCCATGTGGTCAGGTACTGATGGCTGCATCTCATTATGGTCAGGGACGTGTGGTGGTGTTGGGACATGAAAATTACTTAAGACGCTTTCCTGGCCTGATAATGAATGCCTTGACATGGCTCAGGCCAGATACCCGAGATGCCGGGGTTGTAGGGATTCAGAGTCGTTTACATGCAGTAGCTGAAAACTTGAACCACTGCAATATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTGTATATATCACAGATTCTTACAGTGTTGAGACATGTGCAAAGGATCTGATAGCTTTTCTCAAAGCTGGGGGTGGTTTAATCATTGCTGGACAAGCCTGGCACTGGTCTTATGGACACCCACAAGAAAACATTTTGAGGAACTTTCCAGGTAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCAGACCGGAGAAGTCGGCACCTTTCCTGTTCCTGGAAATATCCCTTCTAGTTGGCGAGCTTGGTCAAAACCCAATAACTTTAAAAAGGATCTAGAGTTCTTGCTGGAAGATGTGTCCGAGTTTGACACTCGAGGTGATGCTGTAGCATATGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATCGCTCTCACTCCAGATGGAAAACCATTCGTTGCCGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAAAACTATGTCCACTTTCATGATCAATGCTGTCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGGCTTAAAGCAGCCCATGAGGTGCTGGCCAAATCTGGCTTAGATTGTAAGCTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCCTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGAGGAGGACTTCTGATTGGTGGTCATGCTTGGAATTGGGCCCAGACCCACCGAGGATGCAATGTGATGACTGACAACCCAGGAAACCGCATTCTTAACAAGATGGGATTGAGCCTATTGGGAAATACCTTGAGTGGAGGTTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTATTACTTTTGGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGACAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAACGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGACATAGTGAAGATGCCAGGTTTTCCACAAGTGAGTAGTACCTGTCCTGTGGAAAGTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGCCCTTCTTCCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGatTCAGAAGAATGGATCAGCACTGGCTTATATCTTTGTCCTGGTATGAAGACATACATCACAATACCTCAAGAGATCATTGGAACTAATTGGCAGGTACAGCTTGGTTGTCAGACAAATAACATTGGTGGATCAAACGTCCTCAAGCGAGCTCCTGTGGTCCATGAGCGATTCCCCTTGGACTCAGAAAAGGTCCAGGTCTGTAATCTGTGGGGAGGACTCATCTACTTCGTAGCACCTCCTGAAAGCAAAGTTGATGGGGTGGAAATTGTTGTGCAGACCGCAGTACAGGCTCCATACTTCAAGTCTGGAGAGACCAGTGTAGCTGACTGGGTGGGCAAGATTCGTCAGAGACCTGCTCCCTGGGCAGAACTTGAGTTTGAAAACCTCGTCATGACCTTGCCCTCAGATTTCATTCGGAATCTGGAGCGCCCTGATCAGGTGGCTAAACTTTGGGATGCCATAATGAGAAGCGTAAGTGACTTGGCAGCAACTCCAGCCAAATTCCCCCGCAAGGAGCGATTTGTAGGAGATGTTCAGATCTCTGCTGGTTTCATGCATTCTGGATATCCCATAATGATGCTCTCCAGTTCTGCTTCAGAATTACTAAATGTGAAGGAAGCCCATAAACATGATTTCTGGGGACCACTTCACAAGTTGGGCCATAACCAGCAGCGTAAGGTTTGGGAGTTTCCTCCACACACCACTGAGTGCACCTGCAACCTGTGGTCAGTGTACGTCCATGAGAAAGTGCTGGGTGTGAATAAGGCTAAAGCTCATCCATGCATGACTCTACAAAGCCGGCAGGAACGCATCAAGGAGTATTTCAGTGGTGGTAAAGATTTTGAAAACTGGAATACTTGGACAGCACTCGAGACTTACATGCAGCTTCAGGAGAAATTCGGCTGGGATGCCTTTAAGAAAGTATTTTCTCTCTACCATGATATGAAAGATGTCCCAAATGACAACGCAGGCAAGATGAATCTATATGCCAAGACCTTCTCCAAGGTGGTCAACCACAACTTGTCTCCATTCTTCAAAGTGTGGGGTTGGCCCATCCAGCCCAACACAGAACAGGAGCTGTCCCATCTGCCAGCATGGAGAGACCATCCTGTTAGCCAGTATGCTTAAGAACATGTTGGATAGCAATGAATTATGCACAGTTTTGAATATggagtttaaaaaaacattaccaTAATCatgttttacttttcatttgattaGTGCATAGATGATATATATCAGTGTGAGGTGCTTGCATGTTATTTAAAGCACTTATTAATCAAATGCAGCTGTATAGTTAGTGGGCTAAAGATAAATGTAACCAGAAAATAGGCATTTTTGAATGTAAGAAATAATTCTcaactcaataaataa

Function

symbol description
si:ch211-210b2.4 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane. Orthologous to human TCAF1 (TRPM8 channel associated factor 1) and TCAF2 (TRPM8 channel associated factor 2).

GO:

id name namespace
GO:0010359 regulation of anion channel activity biological_process
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-12 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane. Orthologous to human TCAF1 (TRPM8 channel associated factor 1) and TCAF2 (TRPM8 channel associated factor 2).
ZDB-GENE-131122-13 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000095212 ENSDARG00000096927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017555 False 3046 mRNA 0.45 7 647854 651602
TCONS_00017556 False 1891 mRNA 0.44 2 649737 660394
TCONS_00017557 True 3124 mRNA 0.45 7 656069 660289

Neighbor

gene id symbol gene type direction distance location
XLOC_008885 NA coding downstream 14446 622709 ~ 633408 (-)
XLOC_008884 si:ch73-144d13.7 coding downstream 30057 611229 ~ 617797 (-)
XLOC_008883 si:ch73-144d13.5 coding downstream 43501 586605 ~ 604353 (-)
XLOC_008882 cbln20 coding downstream 71719 572195 ~ 576135 (-)
XLOC_008881 cbln18 coding downstream 79209 556956 ~ 568645 (-)
XLOC_008887 si:ch211-210b2.2 coding upstream 4762 665156 ~ 669476 (-)
XLOC_008888 zgc:171901 coding upstream 12590 672984 ~ 684911 (-)
XLOC_008889 zgc:174574 coding upstream 24613 685007 ~ 704465 (-)
XLOC_008890 si:dkey-7i4.21 coding upstream 62081 722475 ~ 1003553 (-)
XLOC_008891 si:dkey-7i4.19 coding upstream 76128 736522 ~ 739229 (-)
XLOC_008874 NA non-coding downstream 218207 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 222098 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 269667 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 298287 349451 ~ 349567 (-)
XLOC_008893 NA non-coding upstream 152702 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 157797 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 176621 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 209567 869961 ~ 909037 (-)
XLOC_008897 NA non-coding upstream 214934 875328 ~ 875985 (-)

Expression


Co-expression Network