G159484


Basic Information

Item Value
gene id G159484
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3851992 ~ 3919867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181056
TGAAAAACATTCACATTTTTGAACGAGTACTTGTTTTGAGTGGGGAAAATGCGTAACTAGGTGGTGCTTGATGCTTCTGTCGAATTCAGATATAAACAAGACCAGGTTTAATGATGAGAATGAAAAAATAGCAGCATAAGCACAGACTGAAATCGCACAAACATCAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAACAATTTGACACATTCATACTATGTTTATTTTAATGGTGACCATGTTGGGTGAGATACAGCATAGTTATTAGAAGCAAAATGTGATTGATAAGCATTATTCGTCACTATCGGTGTCTCTTTCGATGCTGTAAGCCATGAAGAAAGCGTCGGGGCGGGTTGGGACGAGGGGATGACCCGGTCTCACAATCTCAAAGCCCATGAAACTGAATGTCCGCAGCAGCGATGCTGGAGATGGTAG
>TU181055
TATGTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTGTAGGGTGAGCATTTTTTATTTTGCACACTGTAGCAAACATGCATACAGATCCTATTGAGGCCATAACTAAAAACTCAAATTCATGCACACATCAAGAAAGAAAACACAACAACTTGAAGCCAACGGTAAAAAGAAAATCAACATATCAGCAAAGAAAACCATGAATCTACATACATTGTTGCATGAGAGATCTTATCCATAAATATTATGCTCTAAAAATGATCATGTGTGGGAATGGGTAAAGGGGAATCAGCAAAGAATCCAATTACACTGGAAGTGAAGCCCAGTGGTAATGGCTTAAAAACTAATGGTCACTGTAGAAATTTGGTTTACACTAGTGCAAATACGACTGAAAATACAGCACAACCCTTACAGGAACTACAACGTAGTAATTAACAGGTGGAGGAGAGAGAGAAAAAAAAAAAAAAAAAAAAAAACAATTTGACACATTCATACTATGTTTATTTTAATGGTGACCATGTTGGGTGAGATACAGCATAGTTATTAGAAGCAAAATGTGATTGATAAGCATTATTCGTCACTATCGGTGTCTCTTTCGATGCTGTAAGCCATGAAGAAAGCGTCGGGGCGGGTTGGGACGAGGGGATGACCCGGTCTCACAATCTCAAAGCCCATGAAACTGAATGTCCGCAGCAGCGATGCTGGAGATGGTAG

Function

NR:

description
PREDICTED: casein kinase I isoform delta-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181056 False 436 lncRNA 0.39 2 3851992 3919867
TU181055 True 710 lncRNA 0.37 2 3855067 3919867

Neighbor

gene id symbol gene type direction distance location
CI01000030_03838027_03838812 NA coding upstream 11047 3836328 ~ 3840945 (+)
CI01000030_03825765_03826754 NA coding upstream 25198 3825415 ~ 3826794 (+)
CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding upstream 72960 3765062 ~ 3779032 (+)
CI01000030_03744173_03745628 FOXQ2 coding upstream 106251 3743491 ~ 3745741 (+)
CI01000030_03715463_03716370 NA coding upstream 134423 3714611 ~ 3717569 (+)
CI01000030_03926592_03926762 NA coding downstream 6725 3926592 ~ 3927205 (+)
CI01000030_04070253_04083457 NA coding downstream 149580 4069447 ~ 4083892 (+)
CI01000030_04163915_04171784 CRLF1B coding downstream 244048 4163915 ~ 4171907 (+)
CI01000030_04183583_04213798 CPAMD8 coding downstream 263716 4183583 ~ 4213798 (+)
CI01000030_04219745_04223677 ODF3L2 coding downstream 299878 4219745 ~ 4224790 (+)
G159561 NA non-coding upstream 7996 3843788 ~ 3843996 (+)
G159556 NA non-coding upstream 27441 3824287 ~ 3824551 (+)
G159553 NA non-coding upstream 31946 3819821 ~ 3820046 (+)
G159552 NA non-coding upstream 34993 3816762 ~ 3816999 (+)
G159548 NA non-coding upstream 40012 3811732 ~ 3811980 (+)
G159593 NA non-coding downstream 14256 3934123 ~ 3934444 (+)
G159604 NA non-coding downstream 54363 3974230 ~ 3974587 (+)
G159631 NA non-coding downstream 106667 4026534 ~ 4028557 (+)
G159714 NA non-coding downstream 208516 4128383 ~ 4128777 (+)
G159727 NA non-coding downstream 219116 4138983 ~ 4139239 (+)
CI01000030_03018776_03042194 FGF22 other upstream 808219 3018776 ~ 3043773 (+)
G158416 NA other upstream 1237699 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1569622 2277208 ~ 2282743 (+)
G157726 NA other upstream 2213765 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2845305 1003114 ~ 1003795 (+)
G159685 NA other downstream 511933 4431800 ~ 4488526 (+)
G159816 NA other downstream 596911 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3280068 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3934218 7868292 ~ 7886228 (+)
G162088 NA other downstream 4318098 8237965 ~ 8239604 (+)

Expression


Co-expression Network