XLOC_008887 (si:ch211-210b2.2)


Basic Information

Item Value
gene id XLOC_008887
gene name si:ch211-210b2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 665156 ~ 669476 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017558
gaACCATATTGACCCAGCCTAGATCTCTGATCCTGTAAACTGACCAAGAAAGATTCACTGATTATTCATCATGGCATGTGAACGGGACTACAACACTCTAATGGCTGGTGTGCGAGAGCTTGATCTTCAAGGAAATGCAATCCCCAGCGATCTTTTACTAACAGGTGAACATTCAATTCCCCTTGCCGTAAATCCACGTGGTCAGGTACTGATGGCTGCATCTCATTATGGTCAGGGACGTATTGTGGTGTTGGGACATGAAGGATTCCTAACACGCTTTCCTGTCCTGATGAAGAATGCCCTGACTTGGCTCAGGCCAACTACCAGAGATGCTGGGGTTGTAGGAATTCAGAGGCGTTTACGTGCAGTAGCTGAAAACTTCCCAATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTATATATATCACCGATGCTTACAGTGTTGAGACATGTGCAAAGGATCTGGTAGCTTTTCTCAAAGCTGGGGGTGGTTTGATTATTGCTGGACAAGCCTGGCATTGGTCTCACAAACACCCACAAGAAAGCACTATTAGGAACTTTCCAGGCAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCATCCAGGACAAGTCAGCATCTTTCCTGTTCCTAGAAATATCCCTTCTACTTGGCGTGCTTTGTCAATGTGCCAGAATGTTAAGAAGGATTTGGAGTTCTTGCTGGAAGGTGTCTCAGAGTTCGACACTTGTGGGACTTCAGCATCTGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATTGCTCTCACTCCAGATGGAAAACCATTTTTTGCTGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAACACCACATCCACTTTCATAATCAATGCCATCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGCCTCAAAGCAGCCCATGAGGTACTGGCCAAATCTGGTTTAGATTGTCAGTTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCTTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGTGGAGGACTTCTGATTGGGGGTCATGCTTGGAATTGGGCTAGAACTAACTGGAGCTCTAATGTGATGACTGAATACCCAGGAAACCGCATTCTTAACGAAATGGGATTGATTCTTTTGGAAAATACCTTGAGGGGAGGGTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTACCACTTTTGGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGGCAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAACGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGACATAGTGAAGATGCCAAGTTTTCCACAAGTGAGTAGTACCTGTCCTGTGGAAACTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGACCTTATTTCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGattCGGAAGAATGGATCAGCACTGGCTTATATCTTTCTCCTGGTATGAAGACATACATCACAATACCTCCAGAGATCATTGGAACAAAATGGCAgGTACAGCTTGGTTGTCAGACAGATAACATTGGTGGATCAAACGTCCTCAAGCGAGCTCCTGTGGTCCATGAGCGATTCCCCTTGGACTCAGAAAAGGTCCAGGTCTGTAATCTGTGGGGAGGACTCATCTACTTCGTAGCACCTCCCGAAAGCAAAGTGGATGGGGTGGAAATTGTTGTGCAGACCGCAGTACAGGCTCCATACTTCAAGTCTGGAGAGACCAGTGTAGCTGACTGGGTGGGCAAGATTCGTCAGAGACCTGCTCCCTGGGCAGAACTTGAGTTTGAAAACCTCGTCATGACCTTGCCCTCAGATTTCATTCGGAATCTGGAGCGCCCTGATGAGGTGGCTAAACTTTGGGATGCCATAATGAGAAGCGTAAGTGACTTGGCAGCAACTCCGGCCAAATTCCGGCGCAAGGAGCGATTTGTTGGAGATGTTCAGATCTCTGCTGGCTTCATGCATTCTGGATATCCCATAATGATGCTCTCCAGTTCTGCTTCACAACTACTAAATGTGAAGGAAGCCCATAAACATGATTTCTGGGGACCACTTCACGAGTTGGGCCATAACCAGCAGCGTAAGGTTTGGGAGTTTCCTCCACACACCACTGAGTGCACCTGCAACCTGTGGTCAGTGTACGTCCATGAGAAAGTGCTGGGTGTGAATAAGGCTAAAGCTCATCCATGCATGACTCTAGAAAGCCGGCAGGCTTGTATCAAGAAGTATTTCAGTGGTGGAAAGGATTTAAAAAACTGGACTAAGGCCACAGCACTCGAGACTTACATGCAGCTTCAGGAGAAATTCGGCTGGGATGCCTTTAAGAAAGTATTTTCTCTCTACCATGATATGAAAGATGTCCCAAATGACAACGCAGGCAAGATGAATCTATATGCCAAGACCTTCTCCAAGGTGGTCAACCACAACTTGTCTCCATTCTTCAAAGTGTGGGGTTGGCCCATCCAGCCCAACACAGAACAGGAGCTGTCCCATCTGCCAGCATGGAGAGACCATCCTGTTAGCCAGTATGCATAAGAACATGTTGGATAGCAATGAATTATGCACACAGTTTTTTATATGAAGTTTAAAAAACATTACCATAATCatgttttacttttcatttgattaGTGCATAGATGATATATATCAGTGTGATATCCTTGCATGTTATTTAAAGCACTTATTAATCAAATGCAGCTGTATGGTTAGTCAGCCAAAGATAAATGTAACCAGAAAAgtttttaaatgtaagaaataattctCAACtcattaaataa
>TCONS_00017559
gaACCATATTGACCCAGCCTAGATCTCTGATCCTGTAAACTGACCAAGAAAGATTCACTGATTATTCATCATGGCATGTGAACGGGACTACAACACTCTAATGGCTGGTGTGCGAGAGCTTGATCTTCAAGGAAATGCAATCCCCAGCGATCTTTTACTAACAGGTGAACATTCAATTCCCCTTGCCGTAAATCCACGTGGTCAGGTACTGATGGCTGCATCTCATTATGGTCAGGGACGTATTGTGGTGTTGGGACATGAAGGATTCCTAACACGCTTTCCTGTCCTGATGAAGAATGCCCTGACTTGGCTCAGGCCAACTACCAGAGATGCTGGGGTTGTAGGAATTCAGAGGCGTTTACGTGCAGTAGCTGAAAACTTCCCAATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTATATATATCACCGATGCTTACAGTGTTGAGACATGTGCAAAGGATCTGGTAGCTTTTCTCAAAGCTGGGGGTGGTTTGATTATTGCTGGACAAGCCTGGCATTGGTCTCACAAACACCCACAAGAAAGCACTATTAGGAACTTTCCAGGCAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCATCCAGGACAAGTCAGCATCTTTCCTGTTCCTAGAAATATCCCTTCTACTTGGCGTGCTTTGTCGTAAGCCTAGCAGACATGCATGCATTATTTCCCATTCTTTAACAAAAATAACATGtaataaattgcatttaattgtttcTTTTCAGAATGTGCCAGAATGTTAAGAAGGATTTGGAGTTCTTGCTGGAAGGTGTCTCAGAGTTCGACACTTGTGGGACTTCAGCATCTGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATTGCTCTCACTCCAGATGGAAAACCATTTTTTGCTGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAACACCACATCCACTTTCATAATCAATGCCATCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGCCTCAAAGCAGCCCATGAGGTACTGGCCAAATCTGGTTTAGATTGTCAGTTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCTTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGTGGAGGACTTCTGATTGGGGGTCATGCTTGGAATTGGGCTAGAACTAACTGGAGCTCTAATGTGATGACTGAATACCCAGGAAACCGCATTCTTAACGAAATGGGATTGATTCTTTTGGAAAATACCTTGAGGGGAGGGTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTACCACTTTTGGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGGCAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAACGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGACATAGTGAAGATGCCAAGTTTTCCACAAGTGAGTAGTACCTGTCCTGTGGAAACTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGACCTTATTTCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGattCGGAAGAATGGATCAGCACTGGCTTATATCTTTCTCCTGGTATGAAGACATACATCACAATACCTCCAGAGATCATTGGAACAAAATGGCAgGTACAGCTTGGTTGTCAGACAGATAACATTGGTGGATCAAACGTCCTCAAGCGAGCTCCTGTGGTCCATGAGCGATTCCCCTTGGACTCAGAAAAGGTCCAGGTCTGTAATCTGTGGGGAGGACTCATCTACTTCGTAGCACCTCCCGAAAGCAAAGTGGATGGGGTGGAAATTGTTGTGCAGACCGCAGTACAGGCTCCATACTTCAAGTCTGGAGAGACCAGTGTAGCTGACTGGGTGGGCAAGATTCGTCAGAGACCTGCTCCCTGGGCAGAACTTGAGTTTGAAAACCTCGTCATGACCTTGCCCTCAGATTTCATTCGGAATCTGGAGCGCCCTGATGAGGTGGCTAAACTTTGGGATGCCATAATGAGAAGCGTAAGTGACTTGGCAGCAACTCCGGCCAAATTCCGGCGCAAGGAGCGATTTGTTGGAGATGTTCAGATCTCTGCTGGTCAGTGA

Function

symbol description
si:ch211-210b2.2 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane. Orthologous to human TCAF2 (TRPM8 channel associated factor 2).

GO:

id name namespace
GO:0010359 regulation of anion channel activity biological_process
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131118-33 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane. Orthologous to human TCAF2 (TRPM8 channel associated factor 2).

Ensembl:

ensembl_id ENSDARG00000009402

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017558 False 3039 mRNA 0.45 7 665156 669476
TCONS_00017559 True 2310 mRNA 0.46 4 666200 669476

Neighbor

gene id symbol gene type direction distance location
XLOC_008886 si:ch211-210b2.4 coding downstream 4762 647854 ~ 660394 (-)
XLOC_008885 NA coding downstream 31748 622709 ~ 633408 (-)
XLOC_008884 si:ch73-144d13.7 coding downstream 47359 611229 ~ 617797 (-)
XLOC_008883 si:ch73-144d13.5 coding downstream 60803 586605 ~ 604353 (-)
XLOC_008882 cbln20 coding downstream 89021 572195 ~ 576135 (-)
XLOC_008888 zgc:171901 coding upstream 3508 672984 ~ 684911 (-)
XLOC_008889 zgc:174574 coding upstream 15531 685007 ~ 704465 (-)
XLOC_008890 si:dkey-7i4.21 coding upstream 52999 722475 ~ 1003553 (-)
XLOC_008891 si:dkey-7i4.19 coding upstream 67046 736522 ~ 739229 (-)
XLOC_008892 im:7143333 coding upstream 72722 742198 ~ 745672 (-)
XLOC_008874 NA non-coding downstream 235509 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 239400 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 286969 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 315589 349451 ~ 349567 (-)
XLOC_008893 NA non-coding upstream 143620 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 148715 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 167539 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 200485 869961 ~ 909037 (-)
XLOC_008897 NA non-coding upstream 205852 875328 ~ 875985 (-)

Expression


Co-expression Network