XLOC_008889 (zgc:174574)


Basic Information

Item Value
gene id XLOC_008889
gene name zgc:174574
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 685007 ~ 704465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017563
GTGTGTTGTGATTTTAGAAACGGGACTTTTATCTCGGCATGAcggtgacgtcatcaggcggcgccgcgCTCCGGTTTGTTGTGAATCTACTCGAGAAAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaaactttcagagtcaaacatgaagatcctgaggaacaaacagaccCGATGCCATTCAAACAGAAGAGTCAAGATCAGAGTAAAATGGAAAAGAAGGATCAGTTTGAAGGATGTCATGACTTCAGATCTGGGGGAGAATCAGAACAGACAAAAACCTCCTCGCAAAAAACAGCCCAGAAGACCAAATCTTTTACCTgccatcagtgtggaaagagtttcaagcGGAAACAATGTGTTATAGACCATATGagggttcacactggagaaaagccctaCCCTTGTCAAGAGTGTGGAAAAAGTTTCAAGTGGAAACAATCTGTCATAGACCATATGAGAGTTCACACCGGAGAAAAGCCTTACACTTgtcaacagtgtggaaagagtttcgcttgtaaacaaaactttaaacacCACATGAAGatgcacactggagaaaagctTCACATCTGCAAAcactgtggaaagagtttcacttgGAATCAGAACCTTCATGAgcatatgaggattcacactggagaaaagccttacACCTGCcatgagtgtgggaagagtttcactcGGAAACATAAGCTTAAAGAACATATGAAGGTTCACACTGGAGAAACGCCTTAcacctgccaacagtgtggaaagtcTTTCAATCGGAAACAAAAACTTACAGACCATATAAaggttcacactggagaaaagcctcaCGCATGTCAACACTGTGGGAAGTCTTTCAATCGGAAACAAAAACTTAAAgaccacatgaggattcacactggagaaaggtCTTACGTCTGCCATCAGTGTGGAACGAGTTTCACTTGGAAACAAAACCTTACAAACCACATGAAGACTCACACTATAGGAAAGCCTCACATCTGCCCTCAGTGCGGAAAGAGCTTCACCCAGAAACAAACACTTACTGAGCATATGAGTACTCACACTGGAGAGCAGCGTTTCCCCTGTCAtaagtgtggaaagagtttcagttgGAGAAATGTCCTCGCACAACATCTCAaggttcacactggagaaaaaccgtaTGCTTGCCAACACTGTGGAAAGTGTTTCTCTACTAAAGGGAACAGTAGAAGACATGAGTTAACTCACACTAAAACAAGCCTTACTCCTGGCAAGAGTTAAAAAGaatttaaagcctggtttattcttctgcgtcaagtgaccggcgtaaccccaCAGcctgtagctgtgcatttatacttctgctgctgtctctgttggtctgcattaacacttccgaaacgctagtgggcagtgaggtgtaaatgttcctctgtgtcgagtttcttctctgctgttttgcttttcctgaacgcttccgggatgtacaagtggctcaaactcgctcattttgaggcaggaaccggcggacgtgcaacaactttaactatgaggtaaacacaaaacaaaactttccatcaggagctccttcacgggactccacacttgtaaacaatcgctccatcaggctcacaccattcacgcggctctcggtcccgcccagactcgtcagcgctaccaagccgaccaatcacagagcttacgctacgcgtcgttgcgacgctgacggccacggcgaaggacTATGCATCAacgctgtagcatacgccggcgtttaacgcagaagtataaatcagccttaagacggGGATCAACACACTTGTTACTGGAGGGTcgatgtcctgcagagtttagcgtCAACCCTAATCTAACACCGCTGAACAAGCCTAATcgagggctgtttctcaattccaagaacgcagagaacggacttgtgctCTTGTGACGATCAGTTTTGGCAGGTCACCTCGGAAGAatgaactcaggagaccacgagaacaAAGTATGCGTCCTGTGAGGAATGAGATGCTGAGTTCTTCctaatggtcacatgaccttcacgcctGGTTGTAATCCAAGATCCAAGACCAGCGTCGAGATggtcccaaggtgtccatatccgggaccaggccgtatcctgagctgctggtggtcatggaggagtgaagaccatgagactgattccagtgattctccagggacagacgagtcttcactgaggccagcttccagcctccaccgctgagtctgcagctctgcacaagacttttggccagcggagaaatttaAATGGTCGTGCCCAGCTGAGTCtggtttttctcaaggttttttttcttaactctcctattggtgaagtttttttccctctccgctgtcgccactggcttgcatggtttgggatcgttagagctacccatcgatgaatttgctcttaagtgtttggactctcaataatgacttcaaaccacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactctGACCATTTATgtggagctgctttgacacaatctacattgtaaaagcgctgtacaaataaagctgaattgaatataTACTGTGCATAAAGACTTTGTAattatatgttgcacaatatatataaaactgattttaatacgaatttacttcatgtgtttattcctttattaagattttcatgctattgtttatattcaccgtttcatttagggaaacacctgaggtaaataagttatggcgcagtaggtagtgatgtcgcctcacagcaagaaggtcactggtttgagtctcggctgggtcagttggcgtttctgtgtggagtttgcatgttctccctgcattcgcgtgggtttcctccaggtgctctggtttcccccatagtccaaacacatgcggtacaggggaattgggtaggctaattgtcCATagttaatgtatgtgtgtgaacgagtgtgtgtgggcttcccagtgatgggttgcagctggaagggcatctgctgcgtaaaaaacatatgctggataagatggtggcagttgatgatgacattTCAcgaaaacactttaatatttaagcATTGTAAGCACACTTTCCAGTGGGAAGACTACTGGTCCAGGTGGAATAGAACTTAATGAAGCGTCTGTATTGGCTGCGTTACGGCTTTGTATGTTAAATCGTTCAATTGAGCTAAAAACATGTTAAACGTGTGTCTTTTGAGAAACAAGAAAAGGTGATACTGTGCCTGGTAATTACAGACCAATTAATACTCTTAACCAATCAAAAGGTGATTGCTAAAATTTTGGTTACTTGTTTAAACGTGTATTCATTAATGCATTCTGAGTATTTtctaattcttatttttttcaaatttattttattatatatttttttatttgggacattctaccagaaacgtacattttcaCGTATAAAAAAACGTGACAAGGCCTGCCTTAAGCTTGCCGTCctcaaaaaaatcatacaaaaacaagcataaaatcatacaattcaatgattgAACGCATCTTTGATCACTGCTTCTCCTCCATCAATCAACATCACTTCCAGTCATATCCTTAAAtgtattgcacacattttatattaaatttactgCAAATGTGAACTGACAGAAACTTTGGGACAATTGTAAAATTCTTTGTATtgtatatttgtagtatttatttgtaaaatgtattaataattaagTGTTTTTGATTAGTTGGTGTGAATGATAACAGCTTAAACTTGCTGTTTCTGttctatttctttataaataACAGCTTCTAGcataacaaaacaattaaagctgtaggttcagcTGGGCTGAGGACAAGCACAGTGACCGGGTTTGTacatttaagtgtttttaatgaaaaacaaacaactgAGAACCGAATGGATGACATATTCCTttactcacagaaatcagtccatttcatcagacattttttgggggatgaaatactttttattcactgtttttgtgttttgttta
>TCONS_00017564
CGTCACCAGGCTGCGTCGCTCTATCGGCTGTGAATCCAATCGtgaaagAGCAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaaactttcagagtcaaacatgaagatcctgaggaacaaacag
>TCONS_00017565
gacgtcatcaggcggcgccgcgCTCCGGTTTGTTGTGAATCTACTCGAGAAAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAGCTGATGCCACTCAAAGATGAGAGTCAAGAACAGAATGAGACGGAAGAGACTGTTCAAGATGAGGGATGTCTTGATCTCAGATCTGGAGAAGCATCAGAACAGACGGAAACCTCGCAAAAAACAGCCGAATCGAACACCTGCCATCactgtggaaagagcttcactcGGAAACAGTACCTTACaaaccacatgaggattcacaatGGAGAAAGGCCTTTCAAATGCCACCAGTGTGTAAAGATATTCACACAGAAGCAAAACTTTCTTgaccacatgaggattcacaccggagaaaaGCCGTACACCTGCcaacagtgtgggaagagtttcacttGGAAACGGTACCTCATAACACACACGAGGATGCACACCGGAGAAAAGCCGTACACTTGCCAAGAGTGTGGGAAGTGTTTTGCTCGGAAACATATGCTTACAATCCACATGAGGGTTCACACTGGAGAACGGCCTTACCCTTGCCAAGAGTGTGGAAAGGGTTTCACTCAGAAACATATCCTTATAGAccatatgaggattcacactggagaaaggcCTCACgtttgccaacagtgtggaatGAGTTTCACATGGAAACAATACTACACCGAGCACATGAGGACTCACACGGGAGAAAGGCCTCACGCTTGCCTAcagtgtgggaagaatttcaCCTGTAAACAAAACCTCACCGATCAtatgaggattcacaccggagaaaaGCCGTTCACTTGCCAACAGTGTGGGAAGTGTTTCACTTGTAAACCAAACCTTAGAAGCCACATGAAggttcacactggagaaaggcCTCACGCCTGcagtcagtgtggaaagagttaccCTTGGAAAAAAAACCTTAAGGAGCATATGAGAGTTCACACTGGGGACCAACTTTCAGATGCAAACACTTCCTTGATTCCCATGTGATGCCTCATAATACTGTAAAGCTTTACACCAGTGGCACCCCTAGAGAATTTTCAATGGGTTAGCCAGATGAGGTCACACCAAACCTTGTGGTGCTGCACTAAAAGGAATGAATTCAGTGTCATGTTATAGTTTTGTTTCTgattaatgtaaatgtattaaagtAGATTTATGGCCCTTACCCTTCTTGATTCTACTCTTTGGCCGTACTCGGATTATGTACAGTTGCCATGAACTGGGccgaagcatgcttgtcccccttCCCGTCTTCCCCGACAGCCCGCATTCACATTGCATTTGTGCCTGAGCCACTTACGTCATCGATGGTGCGCTGTTCAGTAA
>TCONS_00017566
gcggcgccgcgCTCCGGTTTGTTGTGAATCTACTCGAGAAAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAGCTGATGCCACTCAAAGATGAGAGTCAAGAACAGAATGAGACGGAAGAGACTGTTCAAGATGAGGGATGTCTTGATCTCAGATCTGGAGAAGCATCAGAACAGACGGAAACCTCGCAAAAAACAGCCGAATCGAACACCTGCCATCactgtggaaagagcttcactcGGAAACAGTACCTTACaaaccacatgaggattcacaatGGAGAAAGGCCTTTCAAATGCCACCAGTGTGTAAAGATATTCACACAGAAGCAAAACTTTCTTgaccacatgaggattcacaccggagaaaaGCCGTACACCTGCcaacagtgtgggaagagtttcacttGGAAACGGTACCTCATAACACACACGAGGATGCACACCGGAGAAAAGCCGTACACTTGCCAAGAGTGTGGGAAGTGTTTTGCTCGGAAACATATGCTTACAATCCACATGAGGGTTCACACTGGAGAACGGCCTTACCCTTGCCAAGAGTGTGGAAAGGGTTTCACTCAGAAACATATCCTTATAGAccatatgaggattcacactggagaaaggcCTCACgtttgccaacagtgtggaatGAGTTTCACATGGAAACAATACTACACCGA

Function

symbol description
zgc:174574 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1529 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000097125 ENSDARG00000097281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017563 False 4065 mRNA 0.42 3 685007 704465
TCONS_00017564 False 186 mRNA 0.41 2 694653 695164
TCONS_00017565 False 1453 mRNA 0.46 3 699742 704419
TCONS_00017566 True 782 mRNA 0.45 3 700397 704408

Neighbor

gene id symbol gene type direction distance location
XLOC_008888 zgc:171901 coding downstream 96 672984 ~ 684911 (-)
XLOC_008887 si:ch211-210b2.2 coding downstream 15531 665156 ~ 669476 (-)
XLOC_008886 si:ch211-210b2.4 coding downstream 24613 647854 ~ 660394 (-)
XLOC_008885 NA coding downstream 51599 622709 ~ 633408 (-)
XLOC_008884 si:ch73-144d13.7 coding downstream 67210 611229 ~ 617797 (-)
XLOC_008890 si:dkey-7i4.21 coding upstream 18010 722475 ~ 1003553 (-)
XLOC_008891 si:dkey-7i4.19 coding upstream 32057 736522 ~ 739229 (-)
XLOC_008892 im:7143333 coding upstream 37733 742198 ~ 745672 (-)
XLOC_008893 NA coding upstream 108631 813096 ~ 815019 (-)
XLOC_008894 NA coding upstream 113726 818191 ~ 848462 (-)
XLOC_008874 NA non-coding downstream 255360 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 259251 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 306820 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 335440 349451 ~ 349567 (-)
XLOC_008895 NA non-coding upstream 132550 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 165496 869961 ~ 909037 (-)
XLOC_008897 NA non-coding upstream 170863 875328 ~ 875985 (-)

Expression


Co-expression Network