Gene
RNA
| Item | Value |
|---|---|
| gene id | G159748 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 4329277 ~ 4329532 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU181363 | True | 256 | lncRNA | 0.45 | 1 | 4329277 | 4329532 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_04271795_04300240 | SHDB, SHD | coding | upstream | 28233 | 4271795 ~ 4301044 (+) |
| CI01000030_04237332_04243409 | SHC2 | coding | upstream | 85490 | 4233688 ~ 4243787 (+) |
| CI01000030_04219745_04223677 | ODF3L2 | coding | upstream | 104487 | 4219745 ~ 4224790 (+) |
| CI01000030_04183583_04213798 | CPAMD8 | coding | upstream | 115479 | 4183583 ~ 4213798 (+) |
| CI01000030_04163915_04171784 | CRLF1B | coding | upstream | 157370 | 4163915 ~ 4171907 (+) |
| CI01000030_04332510_04342834 | MIER2 | coding | downstream | 2978 | 4332510 ~ 4343650 (+) |
| CI01000030_04362878_04366419 | PLPP2, PLPP2B | coding | downstream | 33346 | 4362878 ~ 4367296 (+) |
| CI01000030_04393891_04405162 | NA | coding | downstream | 62418 | 4391950 ~ 4405618 (+) |
| CI01000030_04454078_04461414 | NA | coding | downstream | 122404 | 4451936 ~ 4462114 (+) |
| CI01000030_04552559_04571086 | NA | coding | downstream | 220414 | 4549946 ~ 4573001 (+) |
| G159744 | NA | non-coding | upstream | 5176 | 4323890 ~ 4324101 (+) |
| G159742 | NA | non-coding | upstream | 9703 | 4319170 ~ 4319574 (+) |
| G159741 | NA | non-coding | upstream | 10504 | 4318377 ~ 4318773 (+) |
| G159740 | NA | non-coding | upstream | 11285 | 4317649 ~ 4317992 (+) |
| G159673 | NA | non-coding | upstream | 147891 | 4172428 ~ 4181386 (+) |
| G159816 | NA | non-coding | downstream | 187289 | 4516778 ~ 4517381 (+) |
| G159858 | NA | non-coding | downstream | 287811 | 4617343 ~ 4617551 (+) |
| G159863 | NA | non-coding | downstream | 303656 | 4633188 ~ 4633460 (+) |
| G159841 | NA | non-coding | downstream | 348632 | 4678164 ~ 4680912 (+) |
| G159836 | NA | non-coding | downstream | 408270 | 4737802 ~ 4738938 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | upstream | 1285504 | 3018776 ~ 3043773 (+) |
| G158416 | NA | other | upstream | 1714984 | 2595876 ~ 2614293 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | upstream | 2046907 | 2277208 ~ 2282743 (+) |
| G157726 | NA | other | upstream | 2691050 | 1636867 ~ 1638227 (+) |
| CI01000030_01003310_01003776 | NA | other | upstream | 3322590 | 1003114 ~ 1003795 (+) |
| G159685 | NA | other | downstream | 102268 | 4431800 ~ 4488526 (+) |
| CI01000030_07200104_07202258 | GCGA | other | downstream | 2870403 | 7200104 ~ 7202485 (+) |
| CI01000030_07868597_07886123 | NA | other | downstream | 3524553 | 7868292 ~ 7886228 (+) |
| G162088 | NA | other | downstream | 3908433 | 8237965 ~ 8239604 (+) |
