G159816


Basic Information

Item Value
gene id G159816
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4516778 ~ 4517381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181432
TAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAACCAGGTGAAGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCGGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACCTCCAA
>TU181431
ACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAACCAGGTGAAGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCGGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACCTCCAA
>TU181433
ACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAACCAGGTGAAGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCGGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACCTCCAAGATGACCACTGCCTTGCTAAAAGAAGCTGAGGGTACCTAAACACTATTGAGCATCTGTGGGGCATCCTCAAATGGAAGGTGGAGGAGCGCAAGGTCTCTAACATCCACCAGCTCCGTGATGTCGTCATGGAGGAGTGGAAGAGGACTCCAGTGGCAACCTGTGAAGCTCCGGTGAACTCCATGCCCAAGAGGGTTAAGGCAGTGCTGGAAAATAACGGTGGCCACACAAAATATTGACACTTTGGGCCCAATTTGGACATTTTCACTTAGGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181432 False 330 TUCP 0.51 1 4516778 4517107
TU181431 False 287 lncRNA 0.52 1 4516821 4517107
TU181433 True 561 lncRNA 0.51 1 4516821 4517381

Neighbor

gene id symbol gene type direction distance location
CI01000030_04454078_04461414 NA coding upstream 54707 4451936 ~ 4462114 (+)
CI01000030_04393891_04405162 NA coding upstream 111203 4391950 ~ 4405618 (+)
CI01000030_04362878_04366419 PLPP2, PLPP2B coding upstream 149525 4362878 ~ 4367296 (+)
CI01000030_04332510_04342834 MIER2 coding upstream 173171 4332510 ~ 4343650 (+)
CI01000030_04271795_04300240 SHDB, SHD coding upstream 215777 4271795 ~ 4301044 (+)
CI01000030_04552559_04571086 NA coding downstream 32565 4549946 ~ 4573001 (+)
CI01000030_04575377_04586894 GNA15.1 coding downstream 57693 4575074 ~ 4586927 (+)
CI01000030_04588910_04589122 NA coding downstream 70503 4587884 ~ 4589177 (+)
CI01000030_04708812_04716224 NA coding downstream 191196 4708577 ~ 4717703 (+)
CI01000030_04730959_04734987 NA coding downstream 212320 4729701 ~ 4734987 (+)
G159748 NA non-coding upstream 187289 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 192720 4323890 ~ 4324101 (+)
G159742 NA non-coding upstream 197247 4319170 ~ 4319574 (+)
G159741 NA non-coding upstream 198048 4318377 ~ 4318773 (+)
G159740 NA non-coding upstream 198829 4317649 ~ 4317992 (+)
G159858 NA non-coding downstream 99962 4617343 ~ 4617551 (+)
G159863 NA non-coding downstream 115807 4633188 ~ 4633460 (+)
G159841 NA non-coding downstream 160783 4678164 ~ 4680912 (+)
G159836 NA non-coding downstream 220421 4737802 ~ 4738938 (+)
G159887 NA non-coding downstream 227649 4745030 ~ 4745324 (+)
G159685 NA other upstream 28295 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1473048 3018776 ~ 3043773 (+)
G158416 NA other upstream 1902528 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2234451 2277208 ~ 2282743 (+)
G157726 NA other upstream 2878594 1636867 ~ 1638227 (+)
CI01000030_07200104_07202258 GCGA other downstream 2682554 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3336704 7868292 ~ 7886228 (+)
G162088 NA other downstream 3720584 8237965 ~ 8239604 (+)
G161986 NA other downstream 4027201 8544582 ~ 8548325 (+)
G162137 NA other downstream 4050629 8568010 ~ 8571726 (+)

Expression


Co-expression Network