G159841


Basic Information

Item Value
gene id G159841
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4678164 ~ 4680912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181460
CCAACTCTTTCTCGTCCACCTCAGTGTGTCTTGATCTGGAATGTTTGGGTTCTTCTTTAGCAAACACCGCTTTGGGCTTCTCGTCCTCAGACTCGCTCTCTGATGGAGGCTCATTAATCCAGGCGTCCAAATCCAGACCTTCTGGTATAGGCACTTTCTTCTGGGCCTTGGGGGCCACGGGGTTGAGCTCTCCGGCGAAGAGAGCCGTCACTTCCTCGGCCACCTCCACATTCTTCTGCTGCAGCTTCTGGATGTACTTCACCAGCTGGAGGATGCAGGAAGCCCTCTCCTGCACTTCCAGGTTGGCACTCTGGACGAACAGCGGCAGTCTTTCTATAAGCAGCTGGCTGGTCTCCTGCGCTGCTTGGCTGTCGGTCTCCCCTTCATGCTTCTGCAGCACAGTCGCAAACAGCTTGGCAGCATTTTGTACATACACTGCCTGGATGTGACCAGGCAGGGTGGCCACTTTGGGTCTCAGCATGGCCTCCAAGGTCTGCATGGGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU181460 True 505 lncRNA 0.56 3 4678164 4680912

Neighbor

gene id symbol gene type direction distance location
CI01000030_04588910_04589122 NA coding upstream 88987 4587884 ~ 4589177 (+)
CI01000030_04575377_04586894 GNA15.1 coding upstream 91237 4575074 ~ 4586927 (+)
CI01000030_04552559_04571086 NA coding upstream 105163 4549946 ~ 4573001 (+)
CI01000030_04454078_04461414 NA coding upstream 216050 4451936 ~ 4462114 (+)
CI01000030_04393891_04405162 NA coding upstream 272546 4391950 ~ 4405618 (+)
CI01000030_04708812_04716224 NA coding downstream 27665 4708577 ~ 4717703 (+)
CI01000030_04730959_04734987 NA coding downstream 48789 4729701 ~ 4734987 (+)
CI01000030_04794796_04802874 DDX59 coding downstream 113730 4794642 ~ 4802932 (+)
CI01000030_04804199_04820916 KIF14 coding downstream 123287 4804199 ~ 4821266 (+)
CI01000030_04822608_04834394 NA coding downstream 141696 4822608 ~ 4834400 (+)
G159863 NA non-coding upstream 44704 4633188 ~ 4633460 (+)
G159858 NA non-coding upstream 60613 4617343 ~ 4617551 (+)
G159816 NA non-coding upstream 160783 4516778 ~ 4517381 (+)
G159748 NA non-coding upstream 348632 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 354063 4323890 ~ 4324101 (+)
G159836 NA non-coding downstream 56890 4737802 ~ 4738938 (+)
G159887 NA non-coding downstream 64118 4745030 ~ 4745324 (+)
G159888 NA non-coding downstream 65739 4746651 ~ 4746935 (+)
G159889 NA non-coding downstream 69729 4750641 ~ 4751246 (+)
G159892 NA non-coding downstream 89673 4770585 ~ 4784656 (+)
G159685 NA other upstream 189638 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1634391 3018776 ~ 3043773 (+)
G158416 NA other upstream 2063871 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2395794 2277208 ~ 2282743 (+)
CI01000030_07200104_07202258 GCGA other downstream 2519023 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3173173 7868292 ~ 7886228 (+)
G162088 NA other downstream 3557053 8237965 ~ 8239604 (+)
G161986 NA other downstream 3863670 8544582 ~ 8548325 (+)
G162137 NA other downstream 3887098 8568010 ~ 8571726 (+)

Expression


Co-expression Network