Gene
RNA
| Item | Value |
|---|---|
| gene id | G159836 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 4737802 ~ 4738938 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU181453 | False | 713 | lncRNA | 0.44 | 1 | 4737802 | 4738514 |
| TU181454 | True | 491 | lncRNA | 0.40 | 1 | 4738448 | 4738938 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_04730959_04734987 | NA | coding | upstream | 2815 | 4729701 ~ 4734987 (+) |
| CI01000030_04708812_04716224 | NA | coding | upstream | 20099 | 4708577 ~ 4717703 (+) |
| CI01000030_04588910_04589122 | NA | coding | upstream | 148625 | 4587884 ~ 4589177 (+) |
| CI01000030_04575377_04586894 | GNA15.1 | coding | upstream | 150875 | 4575074 ~ 4586927 (+) |
| CI01000030_04552559_04571086 | NA | coding | upstream | 164801 | 4549946 ~ 4573001 (+) |
| CI01000030_04794796_04802874 | DDX59 | coding | downstream | 55704 | 4794642 ~ 4802932 (+) |
| CI01000030_04804199_04820916 | KIF14 | coding | downstream | 65261 | 4804199 ~ 4821266 (+) |
| CI01000030_04822608_04834394 | NA | coding | downstream | 83670 | 4822608 ~ 4834400 (+) |
| CI01000030_04956344_04956706 | NA | coding | downstream | 217368 | 4956306 ~ 4957238 (+) |
| CI01000030_04965586_04966361 | NA | coding | downstream | 225867 | 4964805 ~ 4966394 (+) |
| G159841 | NA | non-coding | upstream | 56890 | 4678164 ~ 4680912 (+) |
| G159863 | NA | non-coding | upstream | 104342 | 4633188 ~ 4633460 (+) |
| G159858 | NA | non-coding | upstream | 120251 | 4617343 ~ 4617551 (+) |
| G159816 | NA | non-coding | upstream | 220421 | 4516778 ~ 4517381 (+) |
| G159748 | NA | non-coding | upstream | 408270 | 4329277 ~ 4329532 (+) |
| G159887 | NA | non-coding | downstream | 6092 | 4745030 ~ 4745324 (+) |
| G159888 | NA | non-coding | downstream | 7713 | 4746651 ~ 4746935 (+) |
| G159889 | NA | non-coding | downstream | 11703 | 4750641 ~ 4751246 (+) |
| G159892 | NA | non-coding | downstream | 31647 | 4770585 ~ 4784656 (+) |
| G159902 | NA | non-coding | downstream | 49967 | 4788905 ~ 4789290 (+) |
| G159685 | NA | other | upstream | 249276 | 4431800 ~ 4488526 (+) |
| CI01000030_03018776_03042194 | FGF22 | other | upstream | 1694029 | 3018776 ~ 3043773 (+) |
| G158416 | NA | other | upstream | 2123509 | 2595876 ~ 2614293 (+) |
| CI01000030_02277208_02282376 | TM6SF2 | other | upstream | 2455432 | 2277208 ~ 2282743 (+) |
| CI01000030_07200104_07202258 | GCGA | other | downstream | 2460997 | 7200104 ~ 7202485 (+) |
| CI01000030_07868597_07886123 | NA | other | downstream | 3115147 | 7868292 ~ 7886228 (+) |
| G162088 | NA | other | downstream | 3499027 | 8237965 ~ 8239604 (+) |
| G161986 | NA | other | downstream | 3805644 | 8544582 ~ 8548325 (+) |
| G162137 | NA | other | downstream | 3829072 | 8568010 ~ 8571726 (+) |
